Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8jut
Q-score: 0.266
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ Pubmed: 38771880 DOI: doi:10.1073/pnas.2318859121 ]
- Nickel (ii) ion (58 Da, Ligand)
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Unclear peptide (531 Da, Protein from Rattus norvegicus)
- Unclear peptide (291 Da, Protein from Rattus norvegicus)
- Megalin-rap complex (Complex from Rattus norvegicus)
- Alpha-2-macroglobulin receptor-associated protein (42 kDa, Protein from Rattus norvegicus)
- Calcium ion (40 Da, Ligand)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Unclear peptide (528 Da, Protein from Rattus norvegicus)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Unclear peptide (556 Da, Protein from Rattus norvegicus)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8juu
Q-score: 0.291
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ Pubmed: 38771880 DOI: doi:10.1073/pnas.2318859121 ]
- Nickel (ii) ion (58 Da, Ligand)
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Unclear peptide (531 Da, Protein from Rattus norvegicus)
- Unclear peptide (291 Da, Protein from Rattus norvegicus)
- Calcium ion (40 Da, Ligand)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Unclear peptide (528 Da, Protein from Rattus norvegicus)
- Megalin dimer at ph7.4 (1 MDa, Complex from Rattus norvegicus)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Unclear peptide (556 Da, Protein from Rattus norvegicus)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8jx8
Q-score: 0.538
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ Pubmed: 38771880 DOI: doi:10.1073/pnas.2318859121 ]
- Nickel (ii) ion (58 Da, Ligand)
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Unclear peptide (531 Da, Protein from Rattus norvegicus)
- Unclear peptide (291 Da, Protein from Rattus norvegicus)
- Calcium ion (40 Da, Ligand)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Megalin dimer at ph7.4 (1 MDa, Complex from Rattus norvegicus)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Unclear peptide (556 Da, Protein from Rattus norvegicus)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8jx9
Q-score: 0.348
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ Pubmed: 38771880 DOI: doi:10.1073/pnas.2318859121 ]
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Ligand (472 Da, Protein from Rattus norvegicus)
- Calcium ion (40 Da, Ligand)
- Rat megalin head domain (1 MDa, Complex from Rattus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
cryo-EM structure of rat megalin bodyB
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8jxa
Q-score: 0.351
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ Pubmed: 38771880 DOI: doi:10.1073/pnas.2318859121 ]
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Megalin-rap complex (Complex from Rattus norvegicus)
- Calcium ion (40 Da, Ligand)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
Cryo-EM structure of rat megalin wingA
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8jxb
Q-score: 0.447
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ Pubmed: 38771880 DOI: doi:10.1073/pnas.2318859121 ]
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Unclear peptide (528 Da, Protein from Rattus norvegicus)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Megalin dimer at ph7.4 (1 MDa, Complex from Rattus norvegicus)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8jxc
Q-score: 0.456
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ Pubmed: 38771880 DOI: doi:10.1073/pnas.2318859121 ]
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Unclear peptide (528 Da, Protein from Rattus norvegicus)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Megalin dimer at ph7.4 (1 MDa, Complex from Rattus norvegicus)
Cryo-EM structure of rat megalin leg
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8jxd
Q-score: 0.401
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ Pubmed: 38771880 DOI: doi:10.1073/pnas.2318859121 ]
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Megalin dimer at ph7.4 (1 MDa, Complex from Rattus norvegicus)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8jxe
Q-score: 0.539
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ Pubmed: 38771880 DOI: doi:10.1073/pnas.2318859121 ]
- Nickel (ii) ion (58 Da, Ligand)
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Unclear peptide (531 Da, Protein from Rattus norvegicus)
- Unclear peptide (291 Da, Protein from Rattus norvegicus)
- Megalin-rap complex (Complex from Rattus norvegicus)
- Calcium ion (40 Da, Ligand)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Unclear peptide (556 Da, Protein from Rattus norvegicus)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8jxf
Q-score: 0.444
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ Pubmed: 38771880 DOI: doi:10.1073/pnas.2318859121 ]
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Megalin-rap complex (Complex from Rattus norvegicus)
- Alpha-2-macroglobulin receptor-associated protein (42 kDa, Protein from Rattus norvegicus)
- Calcium ion (40 Da, Ligand)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)