Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8jut
Q-score: 0.266
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ DOI: doi:10.1073/pnas.2318859121 Pubmed: 38771880 ]
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Unclear peptide (528 Da, Protein from Rattus norvegicus)
- Unclear peptide (556 Da, Protein from Rattus norvegicus)
- Unclear peptide (531 Da, Protein from Rattus norvegicus)
- Nickel (ii) ion (58 Da, Ligand)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Megalin-rap complex (Complex from Rattus norvegicus)
- Unclear peptide (291 Da, Protein from Rattus norvegicus)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- Alpha-2-macroglobulin receptor-associated protein (42 kDa, Protein from Rattus norvegicus)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8jxf
Q-score: 0.444
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ DOI: doi:10.1073/pnas.2318859121 Pubmed: 38771880 ]
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Megalin-rap complex (Complex from Rattus norvegicus)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- Alpha-2-macroglobulin receptor-associated protein (42 kDa, Protein from Rattus norvegicus)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8jxg
Q-score: 0.455
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ DOI: doi:10.1073/pnas.2318859121 Pubmed: 38771880 ]
- Rap (Complex from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Megalin-rap complex (Complex from Rattus norvegicus)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Rat megalin (Complex)
- Rat rap (38 kDa, Protein from Rattus norvegicus)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8jxh
Q-score: 0.472
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ DOI: doi:10.1073/pnas.2318859121 Pubmed: 38771880 ]
- Rap (Complex from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Unclear peptide (528 Da, Protein from Rattus norvegicus)
- Calcium ion (40 Da, Ligand)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Megalin-rap complex (Complex from Rattus norvegicus)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- Megalin (Complex)
- Alpha-2-macroglobulin receptor-associated protein (38 kDa, Protein from Rattus norvegicus)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8jxi
Q-score: 0.479
Goto S, Tsutsumi A, Lee Y, Hosojima M, Kabasawa H, Komochi K, Nagatoishi S, Takemoto K, Tsumoto K, Nishizawa T, Kikkawa M, Saito A
PNAS (2024) 121 pp. e2318859121-e2318859121 [ DOI: doi:10.1073/pnas.2318859121 Pubmed: 38771880 ]
- Rap (Complex from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
- Unclear peptide (528 Da, Protein from Rattus norvegicus)
- Calcium ion (40 Da, Ligand)
- Ldl receptor related protein 2 (519 kDa, Protein from Rattus norvegicus)
- Megalin-rap complex (Complex from Rattus norvegicus)
- Unclear peptide (472 Da, Protein from Rattus norvegicus)
- Megalin (Complex)
- Alpha-2-macroglobulin receptor-associated protein (38 kDa, Protein from Rattus norvegicus)
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8j7u
Q-score: 0.412
Bui HB, Watanabe S, Nomura N, Liu K, Uemura T, Inoue M, Tsutsumi A, Fujita H, Kinoshita K, Kato Y, Iwata S, Kikkawa M, Inaba K
Nat Commun (2023) 14 pp. 4770-4770 [ Pubmed: 37553324 DOI: doi:10.1038/s41467-023-40521-5 ]
- Zinc ion (65 Da, Ligand)
- Light chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
- Human znt7-fab complex (Complex from Homo sapiens)
- Zinc transporter 7 (43 kDa, Protein from Homo sapiens)
- Heavy chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 8j7w
Q-score: 0.496
Bui HB, Watanabe S, Nomura N, Liu K, Uemura T, Inoue M, Tsutsumi A, Fujita H, Kinoshita K, Kato Y, Iwata S, Kikkawa M, Inaba K
Nat Commun (2023) 14 pp. 4770-4770 [ Pubmed: 37553324 DOI: doi:10.1038/s41467-023-40521-5 ]
- Zinc ion (65 Da, Ligand)
- Light chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
- Human znt7-fab complex (Complex from Homo sapiens)
- Zinc transporter 7 (43 kDa, Protein from Homo sapiens)
- Heavy chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8j7y
Q-score: 0.419
Bui HB, Watanabe S, Nomura N, Liu K, Uemura T, Inoue M, Tsutsumi A, Fujita H, Kinoshita K, Kato Y, Iwata S, Kikkawa M, Inaba K
Nat Commun (2023) 14 pp. 4770-4770 [ Pubmed: 37553324 DOI: doi:10.1038/s41467-023-40521-5 ]
- Zinc ion (65 Da, Ligand)
- Light chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
- Zinc transporter 7 (43 kDa, Protein from Homo sapiens)
- Human znt7delta-his-loop-fab complex (Complex from Homo sapiens)
- Heavy chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8j80
Q-score: 0.504
Bui HB, Watanabe S, Nomura N, Liu K, Uemura T, Inoue M, Tsutsumi A, Fujita H, Kinoshita K, Kato Y, Iwata S, Kikkawa M, Inaba K
Nat Commun (2023) 14 pp. 4770-4770 [ Pubmed: 37553324 DOI: doi:10.1038/s41467-023-40521-5 ]
- Zinc ion (65 Da, Ligand)
- Light chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
- Human znt7-fab complex (Complex from Homo sapiens)
- Zinc transporter 7 (43 kDa, Protein from Homo sapiens)
- Heavy chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7w7t
Q-score: 0.431
Zhang Y, Kobayashi C, Cai X, Watanabe S, Tsutsumi A, Kikkawa M, Sugita Y, Inaba K
Cell Rep (2022) 41 pp. 111760-111760 [ DOI: doi:10.1016/j.celrep.2022.111760 Pubmed: 36476867 ]
- Serca2b with ca (110 MDa, Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Sarcoplasmic/endoplasmic reticulum calcium atpase 2 (114 kDa, Protein from Homo sapiens)