Particulate methane monooxygenase in 0.02% DDM
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 9cl1
Q-score: 0.475
PNAS (2025) 122 pp. e2417993121-e2417993121 [ Pubmed: 39739801 DOI: doi:10.1073/pnas.2417993121 ]
- Particulate methane monooxygenase beta subunit (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase in 0.02% ddm (Complex from Methylococcus capsulatus str. Bath)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase alpha subunit (42 kDa, Protein from Methylococcus capsulatus str. Bath)
- Water (18 Da, Ligand)
- Methane monooxygenase, c subunit (27 kDa, Protein from Methylococcus capsulatus str. Bath)
Particulate methane monooxygenase in washed native membranes
Resolution: 2.42 Å
EM Method: Single-particle
Fitted PDBs: 9cl2
Q-score: 0.606
PNAS (2025) 122 pp. e2417993121-e2417993121 [ Pubmed: 39739801 DOI: doi:10.1073/pnas.2417993121 ]
- Particulate methane monooxygenase gamma subunit (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase in washed native membranes (Cellular component from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase alpha subunit (42 kDa, Protein from Methylococcus capsulatus str. Bath)
- Water (18 Da, Ligand)
- (2r)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexadecanoyloxy)propyl (9z)-heptadec-9-enoate (703 Da, Ligand)
Particulate methane monooxygenase in unwashed native membranes
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9cl3
Q-score: 0.576
PNAS (2025) 122 pp. e2417993121-e2417993121 [ Pubmed: 39739801 DOI: doi:10.1073/pnas.2417993121 ]
- Particulate methane monooxygenase gamma subunit (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase in unwashed native membranes (Cellular component from Methylococcus capsulatus str. Bath)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase alpha subunit (42 kDa, Protein from Methylococcus capsulatus str. Bath)
- Water (18 Da, Ligand)
- (2r)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexadecanoyloxy)propyl (9z)-heptadec-9-enoate (703 Da, Ligand)
Particulate methane monooxygenase in crosslinked, washed native membranes
Resolution: 2.61 Å
EM Method: Single-particle
Fitted PDBs: 9cl4
Q-score: 0.571
PNAS (2025) 122 pp. e2417993121-e2417993121 [ Pubmed: 39739801 DOI: doi:10.1073/pnas.2417993121 ]
- Particulate methane monooxygenase gamma subunit (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase in crosslinked washed native membranes (Cellular component from Methylococcus capsulatus str. Bath)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase alpha subunit (42 kDa, Protein from Methylococcus capsulatus str. Bath)
- Water (18 Da, Ligand)
- (2r)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexadecanoyloxy)propyl (9z)-heptadec-9-enoate (703 Da, Ligand)
particulate methane monooxygenase in native membranes
Resolution: 2.48 Å
EM Method: Single-particle
Fitted PDBs: 9cl5
Q-score: 0.432
PNAS (2025) 122 pp. e2417993121-e2417993121 [ Pubmed: 39739801 DOI: doi:10.1073/pnas.2417993121 ]
- Methane monooxygenase/ammonia monooxygenase subunit a (27 kDa, Protein from Methylocystis sp. ATCC 49242)
- Methane monooxygenase/ammonia monooxygenase subunit b (42 kDa, Protein from Methylocystis sp. ATCC 49242)
- Particulate methane monooxygenase supernumerary helix (2 kDa, Protein from Methylocystis sp. ATCC 49242)
- Particulate methane monooxygenase subunit c (27 kDa, Protein from Methylocystis sp. ATCC 49242)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase in native membranes from methylocystis sp. atcc 49242 (Cellular component from Methylocystis sp. ATCC 49242)
- Water (18 Da, Ligand)
Ammonia monooxygenase in native membranes
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 9cl6
Q-score: 0.4
PNAS (2025) 122 pp. e2417993121-e2417993121 [ Pubmed: 39739801 DOI: doi:10.1073/pnas.2417993121 ]
- Ammonia monooxygenase in native membranes (Cellular component from Nitrosomonas europaea ATCC 19718)
- Ammonia monooxygenase alpha subunit (31 kDa, Protein from Nitrosomonas europaea ATCC 19718)
- Ammonia monooxygenase beta subunit (43 kDa, Protein from Nitrosomonas europaea ATCC 19718)
- Ammonia monooxygenase subunit c (29 kDa, Protein from Nitrosomonas europaea ATCC 19718)
- Ammonia monooxygenase supernumerary helix (4 kDa, Protein from Nitrosomonas europaea ATCC 19718)
- Copper (ii) ion (63 Da, Ligand)
- Water (18 Da, Ligand)
particulate methane monooxygenase potassium cyanide treated
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8sr5
Q-score: 0.501
Tucci FJ, Jodts RJ, Hoffman BM, Rosenzweig AC
Nat Catal (2023) 6 pp. 1194-1204 [ DOI: doi:10.1038/s41929-023-01051-x Pubmed: 38187819 ]
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (29 kDa, Protein from Methylococcus capsulatus)
- Particulate methane monooxygenase beta subunit (28 kDa, Protein from Methylococcus capsulatus)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase alpha subunit (46 kDa, Protein from Methylococcus capsulatus)
- Particulate methane monooxygenase (337 MDa, Complex from Methylococcus capsulatus)
particulate methane monooxygenase crosslinked with 2,2,2-trifluoroethanol bound
Resolution: 2.16 Å
EM Method: Single-particle
Fitted PDBs: 8sqw
Q-score: 0.609
Tucci FJ, Jodts RJ, Hoffman BM, Rosenzweig AC
Nat Catal (2023) 6 pp. 1194-1204 [ DOI: doi:10.1038/s41929-023-01051-x Pubmed: 38187819 ]
- Particulate methane monooxygenase (337 kDa, Complex from Methylococcus capsulatus str. Bath)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Trifluoroethanol (100 Da, Ligand)
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (27 kDa, Protein from Methylococcus capsulatus)
- Decane (142 Da, Ligand)
- Particulate methane monooxygenase beta subunit (27 kDa, Protein from Methylococcus capsulatus)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase alpha subunit (42 kDa, Protein from Methylococcus capsulatus)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
particulate methane monooxygenase crosslinked with 4,4,4-trifluorobutanol bound
Resolution: 2.18 Å
EM Method: Single-particle
Fitted PDBs: 8sr1
Q-score: 0.551
Tucci FJ, Jodts RJ, Hoffman BM, Rosenzweig AC
Nat Catal (2023) 6 pp. 1194-1204 [ DOI: doi:10.1038/s41929-023-01051-x Pubmed: 38187819 ]
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase (337 MDa, Complex from Methylococcus capsulatus str. Bath)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- 4,4,4-trifluorobutan-1-ol (128 Da, Ligand)
- Decane (142 Da, Ligand)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase alpha subunit (42 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
particulate methane monooxygenase incubated with 4,4,4-trifluorobutanol
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8sr2
Q-score: 0.452
Tucci FJ, Jodts RJ, Hoffman BM, Rosenzweig AC
Nat Catal (2023) [ ]
- Particulate methane monooxygenase alpha subunit (46 kDa, Protein from Methylococcus capsulatus str. Bath)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (29 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (28 kDa, Protein from Methylococcus capsulatus str. Bath)
- Decane (142 Da, Ligand)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase (337 MDa, Complex from Methylococcus capsulatus str. Bath)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)