Native-like genome-containing particle of DWV in acidic pH
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7al3
Q-score: 0.26
Skubnik K, Sukenik L, Buchta D, Fuzik T, Prochazkova M, Moravcova J, Smerdova L, Pridal A, Vacha R, Plevka P
Sci Adv (2021) 7 [ Pubmed: 33523856 DOI: doi:10.1126/sciadv.abd7130 ]
- Genome polyprotein (46 kDa, Protein from Deformed wing virus)
- Genome polyprotein (28 kDa, Protein from Deformed wing virus)
- Genome polyprotein (28 kDa, Protein from Deformed wing virus)
- Deformed wing virus (Virus from Deformed wing virus)
Capsid structure of Leishmania RNA virus 1
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 6y83
Q-score: 0.463
Prochazkova M, Fuzik T, Grybchuk D, Falginella FL, Podesvova L, Yurchenko V, Vacha R, Plevka P
J Virol (2021) 95 [ DOI: doi:10.1128/JVI.01957-20 Pubmed: 33208443 ]
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 6hbg
Q-score: 0.573
Buchta D, Fuzik T, Hrebik D, Levdansky Y, Sukenik L, Mukhamedova L, Moravcova J, Vacha R, Plevka P
Nat Commun (2019) 10 pp. 1138-1138 [ DOI: doi:10.1038/s41467-019-09132-x Pubmed: 30850609 ]
- Echovirus 18 viral protein 1 (32 kDa, Protein from Echovirus E18)
- Palmitic acid (256 Da, Ligand)
- Echovirus 18 viral protein 3 (26 kDa, Protein from Echovirus E18)
- Echovirus 18 viral protein 2 (28 kDa, Protein from Echovirus E18)
- Guanine (151 Da, Ligand)
- Echovirus 18 viral protein 4 (7 kDa, Protein from Echovirus E18)
- Echovirus e18 (7 MDa, Virus from Echovirus E18)
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 6hbh
Q-score: 0.553
Buchta D, Fuzik T, Hrebik D, Levdansky Y, Sukenik L, Mukhamedova L, Moravcova J, Vacha R, Plevka P
Nat Commun (2019) 10 pp. 1138-1138 [ DOI: doi:10.1038/s41467-019-09132-x Pubmed: 30850609 ]
- Echovirus 18 capsid protein 2 (28 kDa, Protein from Echovirus E18)
- Echovirus 18 capsid protein 1 (32 kDa, Protein from Echovirus E18)
- Echovirus e18 (7 MDa, Virus from Echovirus E18)
- Echovirus 18 capsid protein 3 (26 kDa, Protein from Echovirus E18)
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 6hbj
Q-score: 0.571
Buchta D, Fuzik T, Hrebik D, Levdansky Y, Sukenik L, Mukhamedova L, Moravcova J, Vacha R, Plevka P
Nat Commun (2019) 10 pp. 1138-1138 [ DOI: doi:10.1038/s41467-019-09132-x Pubmed: 30850609 ]
- Viral protein 3 (26 kDa, Protein from Echovirus E18)
- Viral protein 1 (32 kDa, Protein from Echovirus E18)
- Viral protein 2 (28 kDa, Protein from Echovirus E18)
- Echovirus e18 (5 MDa, Virus from Echovirus E18)
Echovirus 18 Open particle without one pentamer
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6hbk
Q-score: 0.375
Buchta D, Fuzik T, Hrebik D, Levdansky Y, Sukenik L, Mukhamedova L, Moravcova J, Vacha R, Plevka P
Nat Commun (2019) 10 pp. 1138-1138 [ DOI: doi:10.1038/s41467-019-09132-x Pubmed: 30850609 ]
- Echovirus e18 (7 MDa, Virus from Echovirus E18)
- Echovirus 18 capsid protein 1 (32 kDa, Protein from Echovirus E18)
- Echovirus 18 capsid protein 2 (26 kDa, Protein from Echovirus E18)
- Echovirus 18 capsid protein 3 (28 kDa, Protein from Echovirus E18)
Echovirus 18 Open particle without three pentamers
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6hbl
Q-score: 0.286
Buchta D, Fuzik T, Hrebik D, Levdansky Y, Sukenik L, Mukhamedova L, Moravcova J, Vacha R, Plevka P
Nat Commun (2019) 10 pp. 1138-1138 [ DOI: doi:10.1038/s41467-019-09132-x Pubmed: 30850609 ]
- Echovirus e18 (6 MDa, Virus from Echovirus E18)
- Echovirus 18 capsid protein 2 (28 kDa, Protein from Echovirus E18)
- Echovirus 18 capsid protein 1 (32 kDa, Protein from Echovirus E18)
- Echovirus 18 capsid protein 3 (26 kDa, Protein from Echovirus E18)
Echovirus 18 Open particle without two pentamers
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 6hht
Q-score: 0.253
Buchta D, Fuzik T, Hrebik D, Levdansky Y, Sukenik L, Mukhamedova L, Moravcova J, Vacha R, Plevka P
Nat Commun (2019) 10 pp. 1138-1138 [ DOI: doi:10.1038/s41467-019-09132-x Pubmed: 30850609 ]
- Echovirus 18 capsid protein 2 (28 kDa, Protein from Echovirus E18)
- Echovirus 18 capsid protein 1 (32 kDa, Protein from Echovirus E18)
- Echovirus 18 capsid protein 3 (26 kDa, Protein from Echovirus E18)
- Echovirus e18 (6 MDa, Virus from Echovirus E18)