Kim HJ, Szurgot MR, van Eeuwen T, Ricketts MD, Basnet P, Zhang AL, Vogt A, Sharmin S, Kaplan CD, Garcia BA, Marmorstein R, Murakami K
Mol Cell (2024) [ Pubmed: 38925115 DOI: doi:10.1016/j.molcel.2024.05.031 ]
Hir3 Arm/Tail, Hir2 WD40, Hpc2 C-term
Kim HJ, Szurgot MR, van Eeuwen T, Ricketts MD, Basnet P, Zhang AL, Vogt A, Sharmin S, Kaplan CD, Garcia BA, Marmorstein R, Murakami K
Mol Cell (2024) [ Pubmed: 38925115 DOI: doi:10.1016/j.molcel.2024.05.031 ]
Hir1 WD40 domains and Asf1/H3/H4
Kim HJ, Szurgot MR, van Eeuwen T, Ricketts MD, Basnet P, Zhang AL, Vogt A, Sharmin S, Kaplan CD, Garcia BA, Marmorstein R, Murakami K
Mol Cell (2024) 84 pp. 2601-2617.e12 [ Pubmed: 38925115 DOI: doi:10.1016/j.molcel.2024.05.031 ]
Composite map of the Hir complex with Asf1/H3/H4
Kim HJ, Szurgot MR, van Eeuwen T, Ricketts MD, Basnet P, Zhang AL, Vogt A, Sharmin S, Kaplan CD, Garcia BA, Marmorstein R, Murakami K
Mol Cell (2024) 84 pp. 2601-2617.e12 [ Pubmed: 38925115 DOI: doi:10.1016/j.molcel.2024.05.031 ]
Kim HJ, Szurgot MR, van Eeuwen T, Ricketts MD, Basnet P, Zhang AL, Vogt A, Sharmin S, Kaplan CD, Garcia BA, Marmorstein R, Murakami K
Mol Cell (2024) 84 pp. 2601-2617.e12 [ Pubmed: 38925115 DOI: doi:10.1016/j.molcel.2024.05.031 ]
Resolution: 5.67 Å
EM Method: Single-particle
Fitted PDBs: 8ez9
Q-score: 0.074
Chen S, Vogt A, Lee L, Naila T, McKeown R, Tomkinson AE, Lees-Miller SP, He Y
Sci Adv (2023) 9 pp. eadg2838-eadg2838 [ Pubmed: 37256947 DOI: doi:10.1126/sciadv.adg2838 ]
- Unknown region of dna-pkcs (1 kDa, Protein from Homo sapiens)
- Dimer of dna-pkcs (940 kDa, Complex from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit (469 kDa, Protein from Homo sapiens)
NHEJ Long-range complex with PAXX
Resolution: 4.39 Å
EM Method: Single-particle
Fitted PDBs: 8eza
Q-score: 0.216
Chen S, Vogt A, Lee L, Naila T, McKeown R, Tomkinson AE, Lees-Miller SP, He Y
Sci Adv (2023) 9 pp. eadg2838-eadg2838 [ Pubmed: 37256947 DOI: doi:10.1126/sciadv.adg2838 ]
- Protein paxx (21 kDa, Protein from Homo sapiens)
- Dna (31-mer) (9 kDa, DNA from Homo sapiens)
- Dna repair protein xrcc4 (38 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 6 (69 kDa, Protein from Homo sapiens)
- Dna (30-mer) (9 kDa, DNA from Homo sapiens)
- Dna ligase 4 (104 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nhej long-range complex with paxx (1 MDa, Complex)
- Dna-dependent protein kinase catalytic subunit (469 kDa, Protein from Homo sapiens)
- Prkdc_human dna-dependent protein kinase catalytic subunit -- unknown region (1 kDa, Protein from Homo sapiens)
- Non-homologous end-joining factor 1 (33 kDa, Protein from Homo sapiens)
NHEJ Long-range complex with ATP
Resolution: 8.9 Å
EM Method: Single-particle
Fitted PDBs: 8ezb
Q-score: 0.08
Chen S, Vogt A, Lee L, Naila T, McKeown R, Tomkinson AE, Lees-Miller SP, He Y
Sci Adv (2023) 9 pp. eadg2838-eadg2838 [ Pubmed: 37256947 DOI: doi:10.1126/sciadv.adg2838 ]
- Dna repair protein xrcc4 (38 kDa, Protein from Homo sapiens)
- Dna (31-mer) (9 kDa, DNA from Homo sapiens)
- Protein paxx (21 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- X-ray repair cross-complementing protein 6 (69 kDa, Protein from Homo sapiens)
- Dna (30-mer) (9 kDa, DNA from Homo sapiens)
- Dna ligase 4 (104 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nhej long-range complex with atp (1 MDa, Complex)
- Dna-dependent protein kinase catalytic subunit (469 kDa, Protein from Homo sapiens)
- Non-homologous end-joining factor 1 (33 kDa, Protein from Homo sapiens)
DNA-PKcs monomer in dimer DNA-PKcs complex
Chen S, Vogt A, Lee L, Naila T, McKeown R, Tomkinson AE, Lees-Miller SP, He Y
Sci Adv (2023) 9 pp. eadg2838-eadg2838 [ Pubmed: 37256947 DOI: doi:10.1126/sciadv.adg2838 ]
DNAPKcs-Ku-LigIV(BRCT)-PAXX-DNA subcomplex in PAXX-LR complex
Chen S, Vogt A, Lee L, Naila T, McKeown R, Tomkinson AE, Lees-Miller SP, He Y
Sci Adv (2023) 9 pp. eadg2838-eadg2838 [ Pubmed: 37256947 DOI: doi:10.1126/sciadv.adg2838 ]
- Dna(30-mer) (DNA from Homo sapiens)
- Dna(31-mer) (DNA from Homo sapiens)
- Paxx_human protein paxx (Protein from Homo sapiens)
- Prkdc_human dna-dependent protein kinase catalytic subunit (Protein from Homo sapiens)
- Xrcc6_human (Protein from Homo sapiens)
- Nhej long-range complex with paxx (1 MDa, Complex)
- Xrcc5_human x-ray repair cross complementing protein 5 (Protein from Homo sapiens)
- Dnli4_huamn dna ligase 4 (Protein from Homo sapiens)