Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 9bsu
Q-score: 0.463
Bu F, Ye G, Morsheimer K, Mendoza A, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Eaton B, Anantpadma M, Yang G, Liu B, Davey R, Li F
PLoS Pathog (2024) 20 pp. e1012817-e1012817 [ DOI: doi:10.1371/journal.ppat.1012817 Pubmed: 39715280 ]
- Ebov gp (Complex from Ebola virus)
- Envelope glycoprotein (77 kDa, Protein from Ebola virus)
- Nanosota-eb1 (Complex from Vicugna pacos)
- Ebov gp/nanosota-eb1 complex (Complex)
- Nanosota-eb1 (15 kDa, Protein from Vicugna pacos)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9bsv
Q-score: 0.536
Bu F, Ye G, Morsheimer K, Mendoza A, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Eaton B, Anantpadma M, Yang G, Liu B, Davey R, Li F
PLoS Pathog (2024) 20 pp. e1012817-e1012817 [ DOI: doi:10.1371/journal.ppat.1012817 Pubmed: 39715280 ]
- Alpha-d-mannopyranose (180 Da, Ligand)
- Nanosota-eb2 (15 kDa, Protein from Vicugna pacos)
- Envelope glycoprotein (77 kDa, Protein from Ebola virus)
- Ebov gp/nanosota-eb2 complex (Complex)
- Nanosota-eb2 (Complex from Vicugna pacos)
- Ebov glycoprotein (Complex from Ebola virus)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9co6
Q-score: 0.402
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Nanosota-9 (Complex from Vicugna pacos)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ba.5 spike/nanosota-9 complex (Complex)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Ba.5 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Local refinement of BA.5 spike/Nanosota-9 complex
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 9co7
Q-score: 0.44
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (Complex from Vicugna pacos)
- Ba.5 spike/nanosota-9 complex (Complex)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Ba.5 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9co8
Q-score: 0.402
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (Complex from Vicugna pacos)
- Jn.1 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Jn.1 spike/nanosota-9 complex (Complex)
Local refinement of JN.1 spike/Nanosota-9 complex
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 9co9
Q-score: 0.438
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (Complex from Vicugna pacos)
- Jn.1 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Jn.1 spike/nanosota-9 complex (Complex)
SARS-CoV-2 spike/Nb2 complex with 1 RBD up (local refinement at 5.6 A)
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 8g72
Q-score: 0.161
Ye G, Pan R, Bu F, Zheng J, Mendoza A, Wen W, Du L, Spiller B, Wadzinski BE, Liu B, Perlman S, Li F
J Virol (2023) 97 pp. e0144823-e0144823 [ DOI: doi:10.1128/jvi.01448-23 Pubmed: 37855638 ]
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-2 (16 kDa, Protein from Vicugna pacos)
- Sars-cov-2 spike/nb2 complex with 1 rbd up (425 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 bound at 2.5 A
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8g73
Q-score: 0.367
Ye G, Pan R, Bu F, Zheng J, Mendoza A, Wen W, Du L, Spiller B, Wadzinski BE, Liu B, Perlman S, Li F
J Virol (2023) 97 pp. e0144823-e0144823 [ DOI: doi:10.1128/jvi.01448-23 Pubmed: 37855638 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanosota-3 (15 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike/nb3 complex with 2 rbds up and 3 nb3 bound (455 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8g74
Q-score: 0.392
Ye G, Pan R, Bu F, Zheng J, Mendoza A, Wen W, Du L, Spiller B, Wadzinski BE, Liu B, Perlman S, Li F
J Virol (2023) 97 pp. e0144823-e0144823 [ DOI: doi:10.1128/jvi.01448-23 Pubmed: 37855638 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike/nb3 complex with 1 rbd up and 2 nb3 (455 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-3 (14 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g75
Q-score: 0.295
Ye G, Pan R, Bu F, Zheng J, Mendoza A, Wen W, Du L, Spiller B, Wadzinski BE, Liu B, Perlman S, Li F
J Virol (2023) 97 pp. e0144823-e0144823 [ DOI: doi:10.1128/jvi.01448-23 Pubmed: 37855638 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanosota-4 (16 kDa, Protein from Vicugna pacos)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike/nb4 complex with 2 rbds up and 3 nb4 (459 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)