Guillardia theta Fanzor (GtFz) State 1
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 9cer
Q-score: 0.197
Xu P, Saito M, Faure G, Maguire S, Chau-Duy-Tam Vo S, Wilkinson ME, Kuang H, Wang B, Rice WJ, Macrae RK, Zhang F
Cell (2024) 187 pp. 5238-5252.e20 [ Pubmed: 39208796 DOI: doi:10.1016/j.cell.2024.07.050 ]
- Rna (142-mer) (49 kDa, RNA from Guillardia theta)
- Gtfz-omegarna complex (Complex from Guillardia theta)
- Zinc ion (65 Da, Ligand)
- Maltose/maltodextrin-binding periplasmic protein,guillardia theta fanzor1 (124 kDa, Protein from Guillardia theta)
Guillardia theta Fanzor (GtFz) State 2
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 9ces
Q-score: 0.329
Xu P, Saito M, Faure G, Maguire S, Chau-Duy-Tam Vo S, Wilkinson ME, Kuang H, Wang B, Rice WJ, Macrae RK, Zhang F
Cell (2024) 187 pp. 5238-5252.e20 [ Pubmed: 39208796 DOI: doi:10.1016/j.cell.2024.07.050 ]
- Guillardia theta fanzor1-omegarna-target dna complex (Complex from Guillardia theta)
- Dna (5'-d(p*ap*tp*gp*ap*cp*tp*tp*cp*tp*cp*tp*tp*ap*ap*ap*gp*gp*cp*cp*cp*cp*gp*gp*g)-3') (14 kDa, DNA from synthetic construct)
- Dna (5'-d(p*cp*cp*cp*gp*gp*gp*gp*cp*cp*tp*tp*tp*ap*ap*g)-3') (5 kDa, DNA from synthetic construct)
- Maltose/maltodextrin-binding periplasmic protein,guillardia theta fanzor1 (124 kDa, Protein from Guillardia theta)
- Rna (142-mer) (49 kDa, RNA from Guillardia theta)
- Zinc ion (65 Da, Ligand)
Guillardia theta Fanzor (GtFz) State 3
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9cet
Q-score: 0.348
Xu P, Saito M, Faure G, Maguire S, Chau-Duy-Tam Vo S, Wilkinson ME, Kuang H, Wang B, Rice WJ, Macrae RK, Zhang F
Cell (2024) 187 pp. 5238-5252.e20 [ Pubmed: 39208796 DOI: doi:10.1016/j.cell.2024.07.050 ]
- Guillardia theta fanzor1-omegarna-target dna complex (Complex from Guillardia theta)
- Rna (142-mer) (49 kDa, RNA from Guillardia theta)
- Dna (5'-d(p*ap*tp*gp*ap*cp*tp*tp*cp*tp*cp*tp*tp*ap*ap*ap*gp*gp*cp*cp*cp*cp*gp*gp*g)-3') (25 kDa, DNA from synthetic construct)
- Maltose/maltodextrin-binding periplasmic protein,guillardia theta fanzor1 (124 kDa, Protein from Guillardia theta)
- Dna (28-mer) (24 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
Spizellomyces punctatus Fanzor (SpuFz) State 1
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9ceu
Q-score: 0.355
Xu P, Saito M, Faure G, Maguire S, Chau-Duy-Tam Vo S, Wilkinson ME, Kuang H, Wang B, Rice WJ, Macrae RK, Zhang F
Cell (2024) 187 pp. 5238-5252.e20 [ Pubmed: 39208796 DOI: doi:10.1016/j.cell.2024.07.050 ]
- Dna (5'-d(p*cp*cp*tp*ap*tp*ap*gp*ap*tp*ap*tp*gp*cp*cp*cp*gp*gp*gp*tp*ap*cp*cp*g)-3') (16 kDa, DNA from synthetic construct)
- Rna (70-mer) (30 kDa, RNA from Spizellomyces punctatus)
- Spufz1 state 1 (Complex from Spizellomyces punctatus)
- Dna (5'-d(p*cp*gp*gp*tp*ap*cp*cp*cp*gp*gp*gp*cp*ap*tp*a)-3') (16 kDa, DNA from synthetic construct)
- Maltose/maltodextrin-binding periplasmic protein,spizellomyces punctatus fanzor 1 (118 kDa, Protein from Spizellomyces punctatus)
- Zinc ion (65 Da, Ligand)
Spizellomyces punctatus Fanzor (SpuFz) State 2
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 9cev
Q-score: 0.396
Xu P, Saito M, Faure G, Maguire S, Chau-Duy-Tam Vo S, Wilkinson ME, Kuang H, Wang B, Rice WJ, Macrae RK, Zhang F
Cell (2024) 187 pp. 5238-5252.e20 [ Pubmed: 39208796 DOI: doi:10.1016/j.cell.2024.07.050 ]
- Dna (35-mer) (16 kDa, DNA from synthetic construct)
- Rna (81-mer) (30 kDa, RNA from Spizellomyces punctatus)
- Magnesium ion (24 Da, Ligand)
- Spufz1-omegarna-target dna complex (Complex from Spizellomyces punctatus)
- Dna (5'-d(p*cp*gp*gp*tp*ap*cp*cp*cp*gp*gp*gp*cp*ap*tp*a)-3') (16 kDa, DNA from synthetic construct)
- Maltose/maltodextrin-binding periplasmic protein,spizellomyces punctatus fanzor 1 (118 kDa, Protein from Spizellomyces punctatus)
- Zinc ion (65 Da, Ligand)
Spizellomyces punctatus Fanzor (SpuFz) State 3
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9cew
Q-score: 0.472
Xu P, Saito M, Faure G, Maguire S, Chau-Duy-Tam Vo S, Wilkinson ME, Kuang H, Wang B, Rice WJ, Macrae RK, Zhang F
Cell (2024) 187 pp. 5238-5252.e20 [ Pubmed: 39208796 DOI: doi:10.1016/j.cell.2024.07.050 ]
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (7 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (6 kDa, DNA from synthetic construct)
- Spufz1-omegarna-targetdna complex (Complex from Spizellomyces punctatus)
- Dna (29-mer) (16 kDa, DNA from synthetic construct)
- Dna (5'-d(p*cp*gp*gp*tp*ap*cp*cp*cp*gp*gp*gp*cp*ap*tp*a)-3') (16 kDa, DNA from synthetic construct)
- Rna (76-mer) (30 kDa, RNA from Spizellomyces punctatus)
- Maltose/maltodextrin-binding periplasmic protein,spizellomyces punctatus fanzor 1 (118 kDa, Protein from Spizellomyces punctatus)
- Zinc ion (65 Da, Ligand)
Spizellomyces punctatus Fanzor (SpuFz) State 4
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 9cex
Q-score: 0.392
Xu P, Saito M, Faure G, Maguire S, Chau-Duy-Tam Vo S, Wilkinson ME, Kuang H, Wang B, Rice WJ, Macrae RK, Zhang F
Cell (2024) 187 pp. 5238-5252.e20 [ Pubmed: 39208796 DOI: doi:10.1016/j.cell.2024.07.050 ]
- Rna (76-mer) (30 kDa, RNA from Spizellomyces punctatus)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(*(mg)*(mg)p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (4 kDa, DNA from synthetic construct)
- Dna (29-mer) (16 kDa, DNA from synthetic construct)
- Dna (5'-d(p*cp*gp*gp*tp*ap*cp*cp*cp*gp*gp*gp*cp*ap*tp*a)-3') (16 kDa, DNA from synthetic construct)
- Spufz-wrna-tgdna complex state 6 (Complex from Spizellomyces punctatus)
- Maltose/maltodextrin-binding periplasmic protein,spizellomyces punctatus fanzor 1 (118 kDa, Protein from Spizellomyces punctatus)
- Zinc ion (65 Da, Ligand)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (4 kDa, DNA from synthetic construct)
Spizellomyces punctatus Fanzor (SpuFz) State 5
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 9cey
Q-score: 0.441
Xu P, Saito M, Faure G, Maguire S, Chau-Duy-Tam Vo S, Wilkinson ME, Kuang H, Wang B, Rice WJ, Macrae RK, Zhang F
Cell (2024) 187 pp. 5238-5252.e20 [ Pubmed: 39208796 DOI: doi:10.1016/j.cell.2024.07.050 ]
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Spufz-wrna-tgdna complex state 1 (Complex from Spizellomyces punctatus)
- Dna (36-mer) (11 kDa, DNA from synthetic construct)
- Rna (76-mer) (30 kDa, RNA from Spizellomyces punctatus)
- Maltose/maltodextrin-binding periplasmic protein,spizellomyces punctatus fanzor 1 (118 kDa, Protein from Spizellomyces punctatus)
- Dna (26-mer) (16 kDa, DNA from synthetic construct)
Spizellomyces punctatus Fanzor (SpuFz) State 6
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 9cez
Q-score: 0.397
Xu P, Saito M, Faure G, Maguire S, Chau-Duy-Tam Vo S, Wilkinson ME, Kuang H, Wang B, Rice WJ, Macrae RK, Zhang F
Cell (2024) 187 pp. 5238-5252.e20 [ Pubmed: 39208796 DOI: doi:10.1016/j.cell.2024.07.050 ]
- Magnesium ion (24 Da, Ligand)
- Dna (27-mer) (16 kDa, DNA from synthetic construct)
- Spufz-wrna-tgdna complex state 1 (Complex from Spizellomyces punctatus)
- Dna (5'-d(p*tp*ap*cp*cp*cp*gp*gp*gp*cp*ap*tp*a)-3') (16 kDa, DNA from synthetic construct)
- Rna (76-mer) (30 kDa, RNA from Spizellomyces punctatus)
- Maltose/maltodextrin-binding periplasmic protein,spizellomyces punctatus fanzor 1 (118 kDa, Protein from Spizellomyces punctatus)
- Zinc ion (65 Da, Ligand)
Parasitella parasitica Fanzor (PpFz) State 1
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 9cf0
Q-score: 0.412
Xu P, Saito M, Faure G, Maguire S, Chau-Duy-Tam Vo S, Wilkinson ME, Kuang H, Wang B, Rice WJ, Macrae RK, Zhang F
Cell (2024) 187 pp. 5238-5252.e20 [ Pubmed: 39208796 DOI: doi:10.1016/j.cell.2024.07.050 ]
- Parasitella parasitica fanzor 1 omegarna (19 kDa, RNA from Parasitella parasitica)
- Ternary complex of ppfz1-omegarna-dna (Complex from Parasitella parasitica)
- Dna target strand (17 kDa, DNA from synthetic construct)
- Dna non-target strand (17 kDa, DNA from synthetic construct)
- Peptidyl-prolyl cis-trans isomerase (17 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Maltose/maltodextrin-binding periplasmic protein,parasitella parasitica fanzor 1 (144 kDa, Protein from Parasitella parasitica)