pP1192R-DNA-m-AMSA complex DNA binding/cleavage domain
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8yge
Q-score: 0.513
Liu R, Sun J, Li LF, Cheng Y, Li M, Fu L, Li S, Peng G, Wang Y, Liu S, Qu X, Ran J, Li X, Pang E, Qiu HJ, Wang Y, Qi J, Wang H, Gao GF
Nucleic Acids Res (2024) 52 pp. 11301-11316 [ Pubmed: 39166497 DOI: doi:10.1093/nar/gkae703 ]
- Dna (12-mer) (3 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna topoisomerase 2 (135 kDa, Protein from African swine fever virus pig/Kenya/KEN-50/1950)
- Magnesium ion (24 Da, Ligand)
- N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide (393 Da, Ligand)
- Dna (8-mer) (2 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna (20-mer) (6 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
- Pp1192r-dna-m-amsa complex dna binding/cleavage domain (Complex from African swine fever virus pig/Kenya/KEN-50/1950)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8ygg
Q-score: 0.475
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8ygh
Q-score: 0.491
Chaetoceros socialis forma radians RNA virus 1 full capsid
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8b38
Q-score: 0.592
Wang H, Munke A, Li S, Tomaru Y, Okamoto K
Viruses (2022) 14 [ DOI: doi:10.3390/v14112369 Pubmed: 36366467 ]
- Structural polyprotein (26 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Chaetoceros socialis forma radians rna virus 1 (Virus from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (29 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (31 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
haetoceros socialis forma radians RNA virus 1 empty capsid
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8b3j
Q-score: 0.573
Wang H, Munke A, Li S, Tomaru Y, Okamoto K
Viruses (2022) 14 [ DOI: doi:10.3390/v14112369 Pubmed: 36366467 ]
- Structural polyprotein (26 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Chaetoceros socialis forma radians rna virus 1 (Virus from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (29 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (31 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7yhk
Q-score: 0.556
Li T, Chen J, Zheng Q, Xue W, Zhang L, Rong R, Zhang S, Wang Q, Hong M, Zhang Y, Cui L, He M, Lu Z, Zhang Z, Chi X, Li J, Huang Y, Wang H, Tang J, Ying D, Zhou L, Wang Y, Yu H, Zhang J, Gu Y, Chen Y, Li S, Xia N
Nat Commun (2022) 13 pp. 5182-5182 [ DOI: doi:10.1038/s41467-022-32926-5 Pubmed: 36056024 ]
- Cryo-em structure of the ha trimer of a/beijing/262/1995(h1n1) in complex with neutralizing antibody 12h5 (Complex)
- Neutralizing antibody 12h5 (Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 12h5 heavy chain (12 kDa, Protein from Mus musculus)
- Ha trimer of a/beijing/262/1995(h1n1) (Complex from Influenza A virus (A/Beijing/262/1995(H1N1)))
- Hemagglutinin (62 kDa, Protein from Influenza A virus (A/Beijing/262/1995(H1N1)))
- 12h5 light chain (12 kDa, Protein from Mus musculus)
Cryo-EM structure of PEIP-Bs_enolase complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xml
Q-score: 0.468
Zhang K, Li S, Wang Y, Wang Z, Mulvenna N, Yang H, Zhang P, Chen H, Li Y, Wang H, Gao Y, Wigneshweraraj S, Matthews S, Zhang K, Liu B
Cell Rep (2022) 40 pp. 111026-111026 [ DOI: doi:10.1016/j.celrep.2022.111026 Pubmed: 35793626 ]
- Peip-bs_enolase complex (100 kDa, Complex)
- Enolase (46 kDa, Protein from Bacillus subtilis (strain 168))
- Bs_enolase (Complex from Bacillus subtilis (strain 168))
- Putative gene 60 protein (8 kDa, Protein from Bacillus phage SP01)
- Magnesium ion (24 Da, Ligand)
- Peip (Complex from Bacillus phage SP01)
Cryo-EM structure of the Gp168-beta-clamp complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7evp
Q-score: 0.489
Liu B, Li S, Liu Y, Chen H, Hu Z, Wang Z, Zhao Y, Zhang L, Ma B, Wang H, Matthews S, Wang Y, Zhang K
Nucleic Acids Res (2021) 49 pp. 11367-11378 [ Pubmed: 34614154 DOI: doi:10.1093/nar/gkab875 ]
- Beta sliding clamp 2 (Complex from Staphylococcus aureus)
- Beta sliding clamp (41 kDa, Protein from Staphylococcus aureus)
- Gp168 (Complex from Staphylococcus virus Twort)
- Gp168-beta-clamp complex (100 kDa, Complex)
- Sliding clamp inhibitor (8 kDa, Protein from Staphylococcus virus Twort)
Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 5.5
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6ilj
Q-score: 0.51
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ Pubmed: 31104841 DOI: doi:10.1016/j.cell.2019.04.035 ]
- Complement decay-accelerating factor (21 kDa, Protein from Homo sapiens)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
- Cryo-em structure of echovirus 6 complexed with its attachment receptor cd55 at ph 5.5 (Complex from Echovirus E6)
Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 7.4
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ilk
Q-score: 0.586
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ Pubmed: 31104841 DOI: doi:10.1016/j.cell.2019.04.035 ]
- Complement decay-accelerating factor (21 kDa, Protein from Homo sapiens)
- Cryo-em structure of echovirus 6 complexed with its attachment receptor cd55 at ph 7.4 (Complex from Echovirus E6)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)