Yeast RAVE bound to V-ATPase V1 complex
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9cop
Q-score: 0.252
Wang H, Tarsio M, Kane PM, Rubinstein JL
PNAS (2024) 121 pp. e2414511121-e2414511121 [ Pubmed: 39625975 DOI: doi:10.1073/pnas.2414511121 ]
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae)
- Regulator of v-atpase in vacuolar membrane protein 2 (40 kDa, Protein from Saccharomyces cerevisiae)
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit h (54 kDa, Protein from Saccharomyces cerevisiae)
- Regulator of v-atpase in vacuolar membrane protein 1 (155 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit g (12 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase catalytic subunit a (118 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Yeast rave bound to v-atpase v1 complex (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Wang H, Tarsio M, Kane PM, Rubinstein JL
PNAS (2024) 121 pp. e2414511121-e2414511121 [ Pubmed: 39625975 DOI: doi:10.1073/pnas.2414511121 ]
- Rav2p (Protein from Saccharomyces cerevisiae)
- Skp1p (Protein from Saccharomyces cerevisiae)
- Yeast rave complex (Complex from Saccharomyces cerevisiae)
- Rav1p (Protein from Saccharomyces cerevisiae)
Locally refined map of yeast RAVE complex
Wang H, Tarsio M, Kane PM, Rubinstein JL
PNAS (2024) 121 pp. e2414511121-e2414511121 [ Pubmed: 39625975 DOI: doi:10.1073/pnas.2414511121 ]
- Rav2p (Protein from Saccharomyces cerevisiae)
- Yeast rave bound to v-atpase v1 complex (Complex from Saccharomyces cerevisiae)
- Skp1p (Protein from Saccharomyces cerevisiae)
- Rav1p (Protein from Saccharomyces cerevisiae)
Consensus map of yeast RAVE bound to V-ATPase V1
Wang H, Tarsio M, Kane PM, Rubinstein JL
PNAS (2024) 121 pp. e2414511121-e2414511121 [ Pubmed: 39625975 DOI: doi:10.1073/pnas.2414511121 ]
Cryo-EM structure of 6-subunit Smc5/6
Resolution: 6.9 Å
EM Method: Single-particle
Fitted PDBs: 8i13
Q-score: 0.088
Li Q, Zhang J, Haluska C, Zhang X, Wang L, Liu G, Wang Z, Jin D, Cheng T, Wang H, Tian Y, Wang X, Sun L, Zhao X, Chen Z, Wang L
Nat Struct Mol Biol (2024) 31 pp. 1532-1542 [ Pubmed: 38890552 DOI: doi:10.1038/s41594-024-01319-1 ]
- Non-structural maintenance of chromosomes element 4 (46 kDa, Protein from Saccharomyces cerevisiae)
- Cryo-em structure of 6-subunit smc5/6 (Complex from Saccharomyces cerevisiae)
- Smc6 isoform 1 (128 kDa, Protein from Saccharomyces cerevisiae)
- Structural maintenance of chromosomes protein 5 (126 kDa, Protein from Saccharomyces cerevisiae)
- Mms21 isoform 1 (30 kDa, Protein from Saccharomyces cerevisiae)
- Nse3 isoform 1 (34 kDa, Protein from Saccharomyces cerevisiae)
- Non-structural maintenance of chromosomes element 1 homolog (38 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of 6-subunit Smc5/6 arm region
Resolution: 6.02 Å
EM Method: Single-particle
Fitted PDBs: 8i21
Q-score: 0.127
Li Q, Zhang J, Haluska C, Zhang X, Wang L, Liu G, Wang Z, Jin D, Cheng T, Wang H, Tian Y, Wang X, Sun L, Zhao X, Chen Z, Wang L
Nat Struct Mol Biol (2024) 31 pp. 1532-1542 [ Pubmed: 38890552 DOI: doi:10.1038/s41594-024-01319-1 ]
- Structural maintenance of chromosomes protein 6 (128 kDa, Protein from Saccharomyces cerevisiae S288C)
- Structural maintenance of chromosomes protein 5 (126 kDa, Protein from Saccharomyces cerevisiae S288C)
- Cryo-em structure of 6-subunit smc5/6 arm region (Complex from Saccharomyces cerevisiae)
- E3 sumo-protein ligase mms21 (30 kDa, Protein from Saccharomyces cerevisiae S288C)
Cryo-EM structure of 5-subunit Smc5/6 arm region
Resolution: 5.97 Å
EM Method: Single-particle
Fitted PDBs: 8i4v
Q-score: 0.108
Li Q, Zhang J, Haluska C, Zhang X, Wang L, Liu G, Wang Z, Jin D, Cheng T, Wang H, Tian Y, Wang X, Sun L, Zhao X, Chen Z, Wang L
Nat Struct Mol Biol (2024) 31 pp. 1532-1542 [ DOI: doi:10.1038/s41594-024-01319-1 Pubmed: 38890552 ]
- E3 sumo-protein ligase mms21 (28 kDa, Protein from Saccharomyces cerevisiae S288C)
- Structural maintenance of chromosomes protein 6 (128 kDa, Protein from Saccharomyces cerevisiae S288C)
- Structural maintenance of chromosomes protein 5 (123 kDa, Protein from Saccharomyces cerevisiae S288C)
- Cryo-em structure of 5-subunit smc5/6 arm region (Complex from Saccharomyces cerevisiae)
- Dna repair protein kre29 (7 kDa, Protein from Saccharomyces cerevisiae S288C)
Cryo-EM structure of 6-subunit Smc5/6 head region
Resolution: 5.58 Å
EM Method: Single-particle
Fitted PDBs: 8wjn
Q-score: 0.198
Li Q, Zhang J, Haluska C, Zhang X, Wang L, Liu G, Wang Z, Jin D, Cheng T, Wang H, Tian Y, Wang X, Sun L, Zhao X, Chen Z, Wang L
Nat Struct Mol Biol (2024) 31 pp. 1532-1542 [ Pubmed: 38890552 DOI: doi:10.1038/s41594-024-01319-1 ]
- Non-structural maintenance of chromosomes element 1 (38 kDa, Protein from Saccharomyces cerevisiae S288C)
- Non-structural maintenance of chromosomes element 4 (46 kDa, Protein from Saccharomyces cerevisiae S288C)
- Structural maintenance of chromosomes protein 5 (126 kDa, Protein from Saccharomyces cerevisiae S288C)
- Non-structural maintenance of chromosome element 3 (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Structural maintenance of chromosomes protein 6 (128 kDa, Protein from Saccharomyces cerevisiae S288C)
- Cryo-em structure of 6-subunit smc5/6 head region (Complex from Saccharomyces cerevisiae)
Cryo-EM structure of 8-subunit Smc5/6 arm region
Resolution: 6.04 Å
EM Method: Single-particle
Fitted PDBs: 8wjo
Q-score: 0.171
Li Q, Zhang J, Haluska C, Zhang X, Wang L, Liu G, Wang Z, Jin D, Cheng T, Wang H, Tian Y, Wang X, Sun L, Zhao X, Chen Z, Wang L
Nat Struct Mol Biol (2024) 31 pp. 1532-1542 [ DOI: doi:10.1038/s41594-024-01319-1 Pubmed: 38890552 ]
- E3 sumo-protein ligase mms21 (30 kDa, Protein from Saccharomyces cerevisiae S288C)
- Structural maintenance of chromosomes protein 5 (126 kDa, Protein from Saccharomyces cerevisiae S288C)
- Structural maintenance of chromosomes protein 6 (128 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna repair protein kre29 (53 kDa, Protein from Saccharomyces cerevisiae S288C)
- Cryo-em structure of 8-subunit smc5/6 arm region (98 MDa, Complex from Saccharomyces cerevisiae)