pP1192R-DNA-m-AMSA complex DNA binding/cleavage domain
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8yge
Q-score: 0.513
Liu R, Sun J, Li LF, Cheng Y, Li M, Fu L, Li S, Peng G, Wang Y, Liu S, Qu X, Ran J, Li X, Pang E, Qiu HJ, Wang Y, Qi J, Wang H, Gao GF
Nucleic Acids Res (2024) 52 pp. 11301-11316 [ Pubmed: 39166497 DOI: doi:10.1093/nar/gkae703 ]
- Pp1192r-dna-m-amsa complex dna binding/cleavage domain (Complex from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna (8-mer) (2 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna (12-mer) (3 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
- N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide (393 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase 2 (135 kDa, Protein from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna (20-mer) (6 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8ygg
Q-score: 0.475
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8ygh
Q-score: 0.491
Chaetoceros socialis forma radians RNA virus 1 full capsid
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8b38
Q-score: 0.592
Wang H, Munke A, Li S, Tomaru Y, Okamoto K
Viruses (2022) 14 [ Pubmed: 36366467 DOI: doi:10.3390/v14112369 ]
- Chaetoceros socialis forma radians rna virus 1 (Virus from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (29 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (26 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (31 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
haetoceros socialis forma radians RNA virus 1 empty capsid
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8b3j
Q-score: 0.573
Wang H, Munke A, Li S, Tomaru Y, Okamoto K
Viruses (2022) 14 [ Pubmed: 36366467 DOI: doi:10.3390/v14112369 ]
- Chaetoceros socialis forma radians rna virus 1 (Virus from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (29 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (26 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (31 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7yhk
Q-score: 0.556
Li T, Chen J, Zheng Q, Xue W, Zhang L, Rong R, Zhang S, Wang Q, Hong M, Zhang Y, Cui L, He M, Lu Z, Zhang Z, Chi X, Li J, Huang Y, Wang H, Tang J, Ying D, Zhou L, Wang Y, Yu H, Zhang J, Gu Y, Chen Y, Li S, Xia N
Nat Commun (2022) 13 pp. 5182-5182 [ DOI: doi:10.1038/s41467-022-32926-5 Pubmed: 36056024 ]
- Neutralizing antibody 12h5 (Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 12h5 light chain (12 kDa, Protein from Mus musculus)
- Cryo-em structure of the ha trimer of a/beijing/262/1995(h1n1) in complex with neutralizing antibody 12h5 (Complex)
- 12h5 heavy chain (12 kDa, Protein from Mus musculus)
- Hemagglutinin (62 kDa, Protein from Influenza A virus (A/Beijing/262/1995(H1N1)))
- Ha trimer of a/beijing/262/1995(h1n1) (Complex from Influenza A virus (A/Beijing/262/1995(H1N1)))
Cryo-EM structure of PEIP-Bs_enolase complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xml
Q-score: 0.468
Zhang K, Li S, Wang Y, Wang Z, Mulvenna N, Yang H, Zhang P, Chen H, Li Y, Wang H, Gao Y, Wigneshweraraj S, Matthews S, Zhang K, Liu B
Cell Rep (2022) 40 pp. 111026-111026 [ DOI: doi:10.1016/j.celrep.2022.111026 Pubmed: 35793626 ]
- Putative gene 60 protein (8 kDa, Protein from Bacillus phage SP01)
- Peip (Complex from Bacillus phage SP01)
- Peip-bs_enolase complex (100 kDa, Complex)
- Magnesium ion (24 Da, Ligand)
- Bs_enolase (Complex from Bacillus subtilis (strain 168))
- Enolase (46 kDa, Protein from Bacillus subtilis (strain 168))
Cryo-EM structure of the Gp168-beta-clamp complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7evp
Q-score: 0.489
Liu B, Li S, Liu Y, Chen H, Hu Z, Wang Z, Zhao Y, Zhang L, Ma B, Wang H, Matthews S, Wang Y, Zhang K
Nucleic Acids Res (2021) 49 pp. 11367-11378 [ Pubmed: 34614154 DOI: doi:10.1093/nar/gkab875 ]
- Gp168-beta-clamp complex (100 kDa, Complex)
- Beta sliding clamp 2 (Complex from Staphylococcus aureus)
- Beta sliding clamp (41 kDa, Protein from Staphylococcus aureus)
- Sliding clamp inhibitor (8 kDa, Protein from Staphylococcus virus Twort)
- Gp168 (Complex from Staphylococcus virus Twort)
Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 5.5
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6ilj
Q-score: 0.51
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ Pubmed: 31104841 DOI: doi:10.1016/j.cell.2019.04.035 ]
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Complement decay-accelerating factor (21 kDa, Protein from Homo sapiens)
- Cryo-em structure of echovirus 6 complexed with its attachment receptor cd55 at ph 5.5 (Complex from Echovirus E6)
- Sphingosine (299 Da, Ligand)
Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 7.4
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ilk
Q-score: 0.586
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ Pubmed: 31104841 DOI: doi:10.1016/j.cell.2019.04.035 ]
- Cryo-em structure of echovirus 6 complexed with its attachment receptor cd55 at ph 7.4 (Complex from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Complement decay-accelerating factor (21 kDa, Protein from Homo sapiens)
- Sphingosine (299 Da, Ligand)