Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 9cr2
Q-score: 0.162
QRB DISCOV (2024) [ DOI: doi:10.1017/qrd.2024.17 ]
- T-complex protein 1 subunit beta (57 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit gamma (65 kDa, Protein from Saccharomyces cerevisiae)
- Tric at adp state1 (960 kDa, Complex)
- T-complex protein 1 subunit epsilon (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit delta (57 kDa, Protein from Saccharomyces cerevisiae)
- Other tric proteins (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit eta (59 kDa, Protein from Saccharomyces cerevisiae)
- Tric subunit gamma (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit theta (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit zeta (59 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Saccharomyces cerevisiae)
TRiC-ADP-S2 state is a conformation when TRiC incubated in 1 mM ADP
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 9cs3
Q-score: 0.149
QRB DISCOV (2024) [ DOI: doi:10.1017/qrd.2024.17 ]
- T-complex protein 1 subunit epsilon (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit zeta (59 kDa, Protein from Saccharomyces cerevisiae)
- The other tric subunits (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit gamma (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit theta (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit delta (57 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit gamma (65 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit beta (57 kDa, Protein from Saccharomyces cerevisiae)
- Tric at adp state 2 (Complex)
- T-complex protein 1 subunit eta (59 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 9cs4
Q-score: 0.137
QRB DISCOV (2024) [ DOI: doi:10.1017/qrd.2024.17 ]
- T-complex protein 1 subunit beta (57 kDa, Protein from Saccharomyces cerevisiae)
- The other tric subunits (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit gamma (65 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit epsilon (61 kDa, Protein from Saccharomyces cerevisiae)
- Gamma subunit (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit delta (57 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit eta (59 kDa, Protein from Saccharomyces cerevisiae)
- Tric at adp state 3 (Complex)
- T-complex protein 1 subunit theta (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit zeta (59 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Saccharomyces cerevisiae)
TRiC-ADP-S5 state is a conformation when TRiC incubated in 1 mM ADP
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 9cs6
Q-score: 0.262
QRB DISCOV (2024) [ DOI: doi:10.1017/qrd.2024.17 ]
- T-complex protein 1 subunit beta (57 kDa, Protein from Saccharomyces cerevisiae)
- Tric at adp state 5 (Complex)
- The other tric subunits (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit gamma (65 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit epsilon (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit delta (57 kDa, Protein from Saccharomyces cerevisiae)
- Subunit gamma (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit eta (59 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit theta (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit zeta (59 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9csa
Q-score: 0.333
QRB DISCOV (2024) [ DOI: doi:10.1017/qrd.2024.17 ]
- T-complex protein 1 subunit beta (57 kDa, Protein from Saccharomyces cerevisiae)
- Tric at adp state 5 (Complex)
- The other tric subunits (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit gamma (65 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit epsilon (61 kDa, Protein from Saccharomyces cerevisiae)
- Gamma subunit (Complex from Saccharomyces cerevisiae)
- T-complex protein 1 subunit delta (57 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit eta (59 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit theta (61 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit zeta (59 kDa, Protein from Saccharomyces cerevisiae)
- T-complex protein 1 subunit alpha (60 kDa, Protein from Saccharomyces cerevisiae)
Structure of the HER2 (S310F) - pertuzumab (T30S/D31A) complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9l1s
Q-score: 0.459
Bai X, Xu L, Wang Z, Zhuang X, Ning J, Sun Y, Wang H, Guo Y, Xu Y, Guo J, Chen S, Pan L
To Be Published
- Pertuzumab fab heavy chain (24 kDa, Protein from Homo sapiens)
- Receptor tyrosine-protein kinase erbb-2 (70 kDa, Protein from Homo sapiens)
- Her2 (s310f) - pertuzumab (t30s/d31a) complex (Complex from Homo sapiens)
- Pertuzumab fab light chain (23 kDa, Protein from Homo sapiens)
Cryo-EM structure of chitin synthase
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8k52
Q-score: 0.456
Niu S, Qi L, Zhang X, He D, Li P, Wang H, Bi Y
Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms252111667 Pubmed: 39519219 ]
- Manganese (ii) ion (54 Da, Ligand)
- Uridine-5'-diphosphate (404 Da, Ligand)
- Chitin synthase (104 kDa, Protein from Phytophthora sojae strain P6497)
- A membrane-integrated glycosyltransferase that transfers glcnac from udp-glcnac to a growing chitin chain (103 MDa, Complex from Phytophthora sojae)
Cryo-EM structure of chitin synthase
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8z0o
Q-score: 0.486
Niu S, Qi L, Zhang X, He D, Li P, Wang H, Bi Y
Int J Mol Sci (2024) 25 [ Pubmed: 39519219 DOI: doi:10.3390/ijms252111667 ]
- Manganese (ii) ion (54 Da, Ligand)
- Chitin synthase (104 kDa, Protein from Phytophthora sojae strain P6497)
- A membrane-integrated glycosyltransferase that transfers glcnac from udp-glcnac to a growing chitin chain (103 MDa, Complex from Phytophthora sojae strain P6497)
- Uridine-5'-diphosphate (404 Da, Ligand)
Cryo-EM structure of opioid receptor with biased agonist
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8y45
Q-score: 0.407
Cheng L, Miao Z, Liu S, Li Z, Fu H, Xu C, Hu S, Zhao C, Liu Y, Zhao T, Liu W, Wang H, Liu R, Yan W, Tang X, Liu J, Shao Z, Ke B
Nat Commun (2024) 15 pp. 8284-8284 [ DOI: doi:10.1038/s41467-024-52601-1 Pubmed: 39333070 ]
- Scfv16 (28 kDa, Protein from Mus musculus)
- Guanine nucleotide-binding protein g(i) subunit alpha-2 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Delta-type opioid receptor (36 kDa, Protein from Homo sapiens)
- Cryo-em structure of opioid receptor with biased agonist (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- ~{n},~{n}-diethyl-4-(5-oxidanylspiro[chromene-2,4'-piperidine]-4-yl)benzamide (392 Da, Ligand)
Yeast RAVE bound to V-ATPase V1 complex
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9cop
Q-score: 0.252
Wang H, Tarsio M, Kane PM, Rubinstein JL
PNAS (2024) 121 pp. e2414511121-e2414511121 [ Pubmed: 39625975 DOI: doi:10.1073/pnas.2414511121 ]
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae)
- Regulator of v-atpase in vacuolar membrane protein 2 (40 kDa, Protein from Saccharomyces cerevisiae)
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit h (54 kDa, Protein from Saccharomyces cerevisiae)
- Regulator of v-atpase in vacuolar membrane protein 1 (155 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit g (12 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase catalytic subunit a (118 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Yeast rave bound to v-atpase v1 complex (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)