Substrate-engaged mycobacterial Proteasome-associated ATPase - focused 3D refinement (state A)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7px9
Q-score: 0.402
Kavalchuk M, Jomaa A, Muller AU, Weber-Ban E
Nat Commun (2022) 13 pp. 276-276 [ Pubmed: 35022401 DOI: doi:10.1038/s41467-021-27787-3 ]
- Prokaryotic ubiquitin-like protein pup (7 kDa, Protein from Mycobacterium tuberculosis)
- Aaa atpase forming ring-shaped complexes (67 kDa, Protein from Mycobacterium tuberculosis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Mycobacterial proteasome-associated atpase in complex with substrate and open-gate 20scp (1 MDa, Complex from Mycobacterium tuberculosis)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Open-gate mycobacterium 20S CP proteasome in complex MPA - global 3D refinement
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7pxa
Q-score: 0.555
Kavalchuk M, Jomaa A, Muller AU, Weber-Ban E
Nat Commun (2022) 13 pp. 276-276 [ Pubmed: 35022401 DOI: doi:10.1038/s41467-021-27787-3 ]
- Mycobacterial proteasome-associated atpase in complex with substrate and open-gate 20scp (1 MDa, Complex from Mycobacterium tuberculosis)
- Proteasome subunit alpha (26 kDa, Protein from Mycobacterium tuberculosis)
- Aaa atpase forming ring-shaped complexes (67 kDa, Protein from Mycobacterium tuberculosis)
- Proteasome subunit beta (30 kDa, Protein from Mycobacterium tuberculosis)
Substrate-engaged mycobacterial Proteasome-associated ATPase - focused 3D refinement (state B)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7pxb
Q-score: 0.35
Kavalchuk M, Jomaa A, Muller AU, Weber-Ban E
Nat Commun (2022) 13 pp. 276-276 [ Pubmed: 35022401 DOI: doi:10.1038/s41467-021-27787-3 ]
- Prokaryotic ubiquitin-like protein pup (7 kDa, Protein from Mycobacterium tuberculosis)
- Aaa atpase forming ring-shaped complexes (67 kDa, Protein from Mycobacterium tuberculosis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Mycobacterial proteasome-associated atpase in complex with substrate and open-gate 20scp (1 MDa, Complex from Mycobacterium tuberculosis)
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 7pxc
Q-score: 0.474
Kavalchuk M, Jomaa A, Muller AU, Weber-Ban E
Nat Commun (2022) 13 pp. 276-276 [ Pubmed: 35022401 DOI: doi:10.1038/s41467-021-27787-3 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Mycobacterial proteasome-associated atpase in complex with substrate and open-gate 20scp (1 MDa, Complex from Mycobacterium tuberculosis)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Prokaryotic ubiquitin-like protein pup (7 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- Proteasome subunit beta (30 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- Proteasome subunit alpha (26 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- Proteasome-associated atpase (67 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7pxd
Q-score: 0.453
Kavalchuk M, Jomaa A, Muller AU, Weber-Ban E
Nat Commun (2022) 13 pp. 276-276 [ Pubmed: 35022401 DOI: doi:10.1038/s41467-021-27787-3 ]
- Prokaryotic ubiquitin-like protein pup (7 kDa, Protein from Mycobacterium tuberculosis)
- Proteasome subunit alpha (26 kDa, Protein from Mycobacterium tuberculosis)
- Aaa atpase forming ring-shaped complexes (67 kDa, Protein from Mycobacterium tuberculosis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Mycobacterial proteasome-associated atpase in complex with substrate and open-gate 20scp (1 MDa, Complex from Mycobacterium tuberculosis)
- Proteasome subunit beta (30 kDa, Protein from Mycobacterium tuberculosis)
Bolten M, Delley CL, Leibundgut M, Boehringer D, Ban N, Weber-Ban E
Structure (2016) 24 pp. 2138-2151 [ Pubmed: 27839949 DOI: doi:10.1016/j.str.2016.10.008 ]
Binding of the C-terminal GQYL motif of the bacterial proteasome activator Bpa to the 20S proteasome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 5lzp
Q-score: 0.44
Bolten M, Delley CL, Leibundgut M, Boehringer D, Ban N, Weber-Ban E
Structure (2016) 24 pp. 2138-2151 [ Pubmed: 27839949 DOI: doi:10.1016/j.str.2016.10.008 ]
- Proteasome subunit beta (25 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Bacterial proteasome activator (19 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Proteasome subunit alpha (26 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Proteasome in complex with bacterial proteasome activator (930 kDa, Complex from Mycobacterium tuberculosis H37Rv)
Structure of hexameric DyP from Brevibacterium linens
Sutter M, Boehringer D, Gutmann S, Gunther S, Prangishvili D, Loessner MJ, Stetter KO, Weber-Ban E, Ban N
Nat Struct Mol Biol (2008) 15 pp. 939-947 [ DOI: doi:10.1038/nsmb.1473 Pubmed: 19172747 ]
- Structure of hexameric dyp from brevibacterium linens (240 kDa, Sample)
- Dye-decolorizing peroxidase (40 kDa, Protein from Brevibacterium linens)