SARS-CoV-2 Omicron spike in complex with 5817 Fab
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8khc
Q-score: 0.351
Wang Y, Zhang Z, Yang M, Xiong X, Yan Q, Cao L, Wei P, Zhang Y, Zhang L, Lv K, Chen J, Liu X, Zhao X, Xiao J, Zhang S, Zhu A, Gan M, Zhang J, Cai R, Zhuo J, Zhang Y, Rao H, Qu B, Zhang Y, Chen L, Dai J, Cheng L, Hu Q, Chen Y, Lv H, So RTY, Peiris M, Zhao J, Liu X, Mok CKP, Wang X, Zhao J
Cell Rep (2024) 43 pp. 113653-113653 [ Pubmed: 38175758 DOI: doi:10.1016/j.celrep.2023.113653 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron spike in complex with 5817 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of 5817 fab (13 kDa, Protein from Homo sapiens)
- Light chain of 5817 fab (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Water (18 Da, Ligand)
The interface structure of Omicron RBD binding to 5817 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8khd
Q-score: 0.393
Wang Y, Zhang Z, Yang M, Xiong X, Yan Q, Cao L, Wei P, Zhang Y, Zhang L, Lv K, Chen J, Liu X, Zhao X, Xiao J, Zhang S, Zhu A, Gan M, Zhang J, Cai R, Zhuo J, Zhang Y, Rao H, Qu B, Zhang Y, Chen L, Dai J, Cheng L, Hu Q, Chen Y, Lv H, So RTY, Peiris M, Zhao J, Liu X, Mok CKP, Wang X, Zhao J
Cell Rep (2024) 43 pp. 113653-113653 [ Pubmed: 38175758 DOI: doi:10.1016/j.celrep.2023.113653 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of 5817 (11 kDa, Protein from Homo sapiens)
- The interface structure of omicron rbd binding to 5817 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of 5817 (13 kDa, Protein from Homo sapiens)
Cryo-EM structure of cyanobacterial phycobilisome from Synechococcus sp. PCC 7002
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ext
Q-score: 0.11
Zheng L, Zheng Z, Li X, Wang G, Zhang K, Wei P, Zhao J, Gao N
Nat Commun (2021) 12 pp. 5497-5497 [ Pubmed: 34535665 DOI: doi:10.1038/s41467-021-25813-y ]
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechococcus sp. PCC 7002)
- Phycobilisome 32.3 kda linker polypeptide, phycocyanin-associated, rod (32 kDa, Protein from Synechococcus sp. PCC 7002)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechococcus sp. PCC 7002)
- Allophycocyanin beta subunit (17 kDa, Protein from Synechococcus sp. PCC 7002)
- C-phycocyanin subunit alpha (17 kDa, Protein from Synechococcus sp. PCC 7002)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechococcus sp. PCC 7002)
- Phycobiliprotein apce (99 kDa, Protein from Synechococcus sp. PCC 7002)
- Cryo-em structure of cyanobacterial phycobilisome from synechococcus sp. pcc 7002 (6 MDa, Complex from Synechococcus sp. PCC 7002)
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechococcus sp. PCC 7002)
- Allophycocyanin alpha subunit (17 kDa, Protein from Synechococcus sp. PCC 7002)
- Phycocyanobilin (588 Da, Ligand)
- C-phycocyanin subunit beta (18 kDa, Protein from Synechococcus sp. PCC 7002)
Cryo-EM structure of cyanobacterial phycobilisome from Anabaena sp. PCC 7120
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7eyd
Q-score: 0.171
Zheng L, Zheng Z, Li X, Wang G, Zhang K, Wei P, Zhao J, Gao N
Nat Commun (2021) 12 pp. 5497-5497 [ Pubmed: 34535665 DOI: doi:10.1038/s41467-021-25813-y ]
- C-phycocyanin beta subunit (18 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Allophycocyanin subunit beta (17 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Phycobilisome rod-core linker polypeptide cpcg2 (28 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Phycobiliprotein apce (127 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Phycobilisome rod-core linker polypeptide cpcg4 (29 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Cryo-em structure of cyanobacterial phycobilisome from anabaena sp. pcc 7120 (7 MDa, Complex from Nostoc sp. PCC 7120 = FACHB-418)
- Phycobilisome rod-core linker polypeptide cpcg1 (31 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- C-phycocyanin alpha subunit (17 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod (32 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Allophycocyanin subunit alpha 1 (17 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)