SARS-CoV-2 Spike RBD in complex with DMAbs 2130 and 2196
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8d8q
Q-score: 0.358
Parzych EM, Du J, Ali AR, Schultheis K, Frase D, Smith TRF, Cui J, Chokkalingam N, Tursi NJ, Andrade VM, Warner BM, Gary EN, Li Y, Choi J, Eisenhauer J, Maricic I, Kulkarni A, Chu JD, Villafana G, Rosenthal K, Ren K, Francica JR, Wootton SK, Tebas P, Kobasa D, Broderick KE, Boyer JD, Esser MT, Pallesen J, Kulp DW, Patel A, Weiner DB
Nat Commun (2022) 13 pp. 5886-5886 [ DOI: doi:10.1038/s41467-022-33309-6 Pubmed: 36202799 ]
- Spike glycoprotein (131 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2196 heavy chain (24 kDa, Protein from Homo sapiens)
- 2196 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike rbd in complex with dmabs 2130 and 2196 (700 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2130 heavy chain (24 kDa, Protein from Homo sapiens)
- 2130 light chain (24 kDa, Protein from Homo sapiens)
SARS-CoV-2 Spike RBD in complex with DMAb 2196
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8d8r
Q-score: 0.281
Parzych EM, Du J, Ali AR, Schultheis K, Frase D, Smith TRF, Cui J, Chokkalingam N, Tursi NJ, Andrade VM, Warner BM, Gary EN, Li Y, Choi J, Eisenhauer J, Maricic I, Kulkarni A, Chu JD, Villafana G, Rosenthal K, Ren K, Francica JR, Wootton SK, Tebas P, Kobasa D, Broderick KE, Boyer JD, Esser MT, Pallesen J, Kulp DW, Patel A, Weiner DB
Nat Commun (2022) 13 pp. 5886-5886 [ DOI: doi:10.1038/s41467-022-33309-6 Pubmed: 36202799 ]
- Spike glycoprotein (131 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2196 heavy chain (24 kDa, Protein from Homo sapiens)
- 2196 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike rbd in complex with dmab 2196 (700 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7sq1
Q-score: 0.406
Xu Z, Walker S, Wise MC, Chokkalingam N, Purwar M, Moore A, Tello-Ruiz E, Wu Y, Majumdar S, Konrath KM, Kulkarni A, Tursi NJ, Zaidi FI, Reuschel EL, Patel I, Obeirne A, Du J, Schultheis K, Gites L, Smith T, Mendoza J, Broderick KE, Humeau L, Pallesen J, Weiner DB, Kulp DW
Nat Commun (2022) 13 pp. 695-695 [ DOI: doi:10.1038/s41467-022-28363-z Pubmed: 35121758 ]
- C05 fab light chain (12 kDa, Protein from Mus musculus)
- Envelope glycoprotein gp160 (52 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- C05 fab heavy chain (13 kDa, Protein from Mus musculus)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Bg505.md39ts env trimer in complex with fab from antibody c05 (410 kDa, Complex)