SARS-CoV-2 Spike RBD in complex with DMAbs 2130 and 2196
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8d8q
Q-score: 0.358
Parzych EM, Du J, Ali AR, Schultheis K, Frase D, Smith TRF, Cui J, Chokkalingam N, Tursi NJ, Andrade VM, Warner BM, Gary EN, Li Y, Choi J, Eisenhauer J, Maricic I, Kulkarni A, Chu JD, Villafana G, Rosenthal K, Ren K, Francica JR, Wootton SK, Tebas P, Kobasa D, Broderick KE, Boyer JD, Esser MT, Pallesen J, Kulp DW, Patel A, Weiner DB
Nat Commun (2022) 13 pp. 5886-5886 [ Pubmed: 36202799 DOI: doi:10.1038/s41467-022-33309-6 ]
- 2130 light chain (24 kDa, Protein from Homo sapiens)
- 2196 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike rbd in complex with dmabs 2130 and 2196 (700 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2130 heavy chain (24 kDa, Protein from Homo sapiens)
- Spike glycoprotein (131 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2196 heavy chain (24 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 Spike RBD in complex with DMAb 2196
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8d8r
Q-score: 0.281
Parzych EM, Du J, Ali AR, Schultheis K, Frase D, Smith TRF, Cui J, Chokkalingam N, Tursi NJ, Andrade VM, Warner BM, Gary EN, Li Y, Choi J, Eisenhauer J, Maricic I, Kulkarni A, Chu JD, Villafana G, Rosenthal K, Ren K, Francica JR, Wootton SK, Tebas P, Kobasa D, Broderick KE, Boyer JD, Esser MT, Pallesen J, Kulp DW, Patel A, Weiner DB
Nat Commun (2022) 13 pp. 5886-5886 [ Pubmed: 36202799 DOI: doi:10.1038/s41467-022-33309-6 ]
- 2196 light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (131 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike rbd in complex with dmab 2196 (700 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2196 heavy chain (24 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7sq1
Q-score: 0.406
Xu Z, Walker S, Wise MC, Chokkalingam N, Purwar M, Moore A, Tello-Ruiz E, Wu Y, Majumdar S, Konrath KM, Kulkarni A, Tursi NJ, Zaidi FI, Reuschel EL, Patel I, Obeirne A, Du J, Schultheis K, Gites L, Smith T, Mendoza J, Broderick KE, Humeau L, Pallesen J, Weiner DB, Kulp DW
Nat Commun (2022) 13 pp. 695-695 [ Pubmed: 35121758 DOI: doi:10.1038/s41467-022-28363-z ]
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Envelope glycoprotein gp160 (52 kDa, Protein from Human immunodeficiency virus 1)
- C05 fab heavy chain (13 kDa, Protein from Mus musculus)
- Bg505.md39ts env trimer in complex with fab from antibody c05 (410 kDa, Complex)
- C05 fab light chain (12 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)