Proteasomal late precursor complex from pre1-1
Resolution: 2.14 Å
EM Method: Single-particle
Fitted PDBs: 8rvl
Q-score: 0.658
Mark E, Ramos PC, Kayser F, Hockendorff J, Dohmen RJ, Wendler P
Life Sci Alliance (2024) 7 [ Pubmed: 39260885 DOI: doi:10.26508/lsa.202402865 ]
- Proteasomal late precursor complex from pre1-1 (Complex from Saccharomyces cerevisiae)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome assembly chaperone 2 (30 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-1 (23 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-6 (26 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-4 (24 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-2 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome chaperone 1 (30 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome maturation factor ump1 (16 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-7 (29 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-5 (31 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae)
Proteasomal late precursor complex from pre1-1, state 1
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 8rvo
Q-score: 0.547
Mark E, Ramos PC, Kayser F, Hockendorff J, Dohmen RJ, Wendler P
Life Sci Alliance (2024) 7 [ Pubmed: 39260885 DOI: doi:10.26508/lsa.202402865 ]
- Proteasomal late precursor complex from pre1-1 (Complex from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-1 (23 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome assembly chaperone 2 (30 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-6 (26 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-4 (24 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome chaperone 1 (30 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome maturation factor ump1 (16 kDa, Protein from Saccharomyces cerevisiae)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-2 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-7 (29 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-5 (31 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae)
Proteasomal late precursor complex from pre1-1, state 2
Resolution: 2.28 Å
EM Method: Single-particle
Fitted PDBs: 8rvp
Q-score: 0.628
Mark E, Ramos PC, Kayser F, Hockendorff J, Dohmen RJ, Wendler P
Life Sci Alliance (2024) 7 [ Pubmed: 39260885 DOI: doi:10.26508/lsa.202402865 ]
- Proteasomal late precursor complex from pre1-1 (Complex from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-1 (23 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome assembly chaperone 2 (30 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-6 (26 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-4 (24 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome chaperone 1 (30 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome maturation factor ump1 (16 kDa, Protein from Saccharomyces cerevisiae)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-2 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-7 (29 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-5 (31 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 2.02 Å
EM Method: Single-particle
Fitted PDBs: 8rvq
Q-score: 0.659
Mark E, Ramos PC, Kayser F, Hockendorff J, Dohmen RJ, Wendler P
Life Sci Alliance (2024) 7 [ Pubmed: 39260885 DOI: doi:10.26508/lsa.202402865 ]
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-7 (25 kDa, Protein from Saccharomyces cerevisiae)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae)
- 20s proteasome from pre1-1 (Complex from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-2 (25 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-4 (24 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-6 (24 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-1 (21 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-5 (23 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae)
Blm10-20S proteasome complex from pre1-1
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 9gbk
Q-score: 0.585
Mark E, Ramos PC, Kayser F, Hockendorff J, Dohmen RJ, Wendler P
Life Sci Alliance (2024) 7 [ Pubmed: 39260885 DOI: doi:10.26508/lsa.202402865 ]
- Blm10-20s proteasome complex from pre1-1 (Complex)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-2 (25 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome activator blm10 (246 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-1 (21 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae)
- 20s proteasome core (Complex from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-4 (Complex from Saccharomyces cerevisiae)
- Proteasome subunit beta type-4 (24 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-5 (23 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-7 (25 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-6 (24 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae)
cryoEM structure of Photosystem II averaged across S2-S3 states at 1.71 Angstrom resolution
Resolution: 1.71 Å
EM Method: Single-particle
Fitted PDBs: 9evx
Q-score: 0.749
Hussein R, Graca A, Forsman J, Aydin AO, Hall M, Gaetcke J, Chernev P, Wendler P, Dobbek H, Messinger J, Zouni A, Schroder WP
Science (2024) 384 pp. 1349-1355 [ Pubmed: 38900892 DOI: doi:10.1126/science.adn6541 ]
- Photosystem ii reaction center x protein (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii 12 kda extrinsic protein (15 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein z (6 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Heme c (618 Da, Ligand)
- Dimeric core complex of psii dpsii (750 MDa, Complex from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein j (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein m (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem ii cp43 reaction center protein (50 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Thermosynechococcus vestitus BP-1)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Cytochrome b559 subunit beta (5 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein l (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii d2 protein (39 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein t (3 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Water (18 Da, Ligand)
- Photosystem ii protein d1 1 (38 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Bicarbonate ion (61 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (5 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii manganese-stabilizing polypeptide (29 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Stearic acid (284 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center protein k (5 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein h (7 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Cytochrome c-550 (18 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein i (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 6tra
Q-score: 0.589
Koelsch A, Radon C, Golub M, Baumert A, Burger J, Miehlke T, Lisdat F, Feoktystov A, Pieper J, Zouni A, Wendler P
Curr Opin Struct Biol (2020) 2 pp. 171-179 [ DOI: doi:10.1016/j.crstbi.2020.08.003 ]
- Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Photosystem i reaction center subunit iii (15 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Water (18 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Photosystem i (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Phylloquinone (450 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 6trc
Q-score: 0.549
Koelsch A, Radon C, Golub M, Baumert A, Burger J, Miehlke T, Lisdat F, Feoktystov A, Pieper J, Zouni A, Wendler P
Curr Opin Struct Biol (2020) 2 pp. 171-179 [ DOI: doi:10.1016/j.crstbi.2020.08.003 ]
- Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Water (18 Da, Ligand)
- Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Iron/sulfur cluster (351 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 6trd
Q-score: 0.45
Koelsch A, Radon C, Golub M, Baumert A, Burger J, Miehlke T, Lisdat F, Feoktystov A, Pieper J, Zouni A, Wendler P
Curr Opin Struct Biol (2020) 2 pp. 171-179 [ DOI: doi:10.1016/j.crstbi.2020.08.003 ]
- Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit iii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Water (18 Da, Ligand)
- Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Calcium ion (40 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Iron/sulfur cluster (351 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 6tg9
Q-score: 0.499
Radon C, Mittelstadt G, Duffus BR, Burger J, Hartmann T, Mielke T, Teutloff C, Leimkuhler S, Wendler P
Nat Commun (2020) 11 pp. 1912-1912 [ DOI: doi:10.1038/s41467-020-15614-0 Pubmed: 32313256 ]
- Formate dehydrogenase subunit alpha (104 kDa, Protein from Rhodobacter capsulatus)
- Formate dehydrogenase subunit gamma (15 kDa, Protein from Rhodobacter capsulatus)
- Iron/sulfur cluster (351 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Formate dehydrogenase subunit beta (52 kDa, Protein from Rhodobacter capsulatus)
- Hydrosulfuric acid (34 Da, Ligand)
- Nad-dependent formate dehydrogenase subunit delta (7 kDa, Protein from Rhodobacter capsulatus)
- 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide (740 Da, Ligand)
- 1,4-dihydronicotinamide adenine dinucleotide (665 Da, Ligand)
- Formate dehydrogenase, nadh reduced (360 kDa, Complex from Rhodobacter capsulatus)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Molybdenum(vi) ion (95 Da, Ligand)