Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 6tra
Q-score: 0.589
Koelsch A, Radon C, Golub M, Baumert A, Burger J, Miehlke T, Lisdat F, Feoktystov A, Pieper J, Zouni A, Wendler P
Curr Opin Struct Biol (2020) 2 pp. 171-179 [ DOI: doi:10.1016/j.crstbi.2020.08.003 ]
- Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Photosystem i reaction center subunit iii (15 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Water (18 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Photosystem i (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Phylloquinone (450 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 6trc
Q-score: 0.549
Koelsch A, Radon C, Golub M, Baumert A, Burger J, Miehlke T, Lisdat F, Feoktystov A, Pieper J, Zouni A, Wendler P
Curr Opin Struct Biol (2020) 2 pp. 171-179 [ DOI: doi:10.1016/j.crstbi.2020.08.003 ]
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit iii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Water (18 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Chlorophyll a (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 6trd
Q-score: 0.45
Koelsch A, Radon C, Golub M, Baumert A, Burger J, Miehlke T, Lisdat F, Feoktystov A, Pieper J, Zouni A, Wendler P
Curr Opin Struct Biol (2020) 2 pp. 171-179 [ DOI: doi:10.1016/j.crstbi.2020.08.003 ]
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit iii (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i 4.8k protein (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Water (18 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Chlorophyll a (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i (1 MDa, Complex from Thermosynechococcus elongatus BP-1)
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 6tg9
Q-score: 0.499
Radon C, Mittelstadt G, Duffus BR, Burger J, Hartmann T, Mielke T, Teutloff C, Leimkuhler S, Wendler P
Nat Commun (2020) 11 pp. 1912-1912 [ Pubmed: 32313256 DOI: doi:10.1038/s41467-020-15614-0 ]
- 1,4-dihydronicotinamide adenine dinucleotide (665 Da, Ligand)
- Nad-dependent formate dehydrogenase subunit delta (7 kDa, Protein from Rhodobacter capsulatus)
- Iron/sulfur cluster (351 Da, Ligand)
- Hydrosulfuric acid (34 Da, Ligand)
- Formate dehydrogenase subunit alpha (104 kDa, Protein from Rhodobacter capsulatus)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Formate dehydrogenase, nadh reduced (360 kDa, Complex from Rhodobacter capsulatus)
- Flavin mononucleotide (456 Da, Ligand)
- 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide (740 Da, Ligand)
- Molybdenum(vi) ion (95 Da, Ligand)
- Formate dehydrogenase subunit beta (52 kDa, Protein from Rhodobacter capsulatus)
- Formate dehydrogenase subunit gamma (15 kDa, Protein from Rhodobacter capsulatus)
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 6tga
Q-score: 0.496
Radon C, Mittelstadt G, Duffus BR, Burger J, Hartmann T, Mielke T, Teutloff C, Leimkuhler S, Wendler P
Nat Commun (2020) 11 pp. 1912-1912 [ Pubmed: 32313256 DOI: doi:10.1038/s41467-020-15614-0 ]
- Formate dehydrogenase, as isolated (360 kDa, Complex from Rhodobacter capsulatus)
- Formate dehydrogenase subunit alpha (104 kDa, Protein from Rhodobacter capsulatus)
- Formate dehydrogenase subunit beta (52 kDa, Protein from Rhodobacter capsulatus)
- Iron/sulfur cluster (351 Da, Ligand)
- Hydrosulfuric acid (34 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Nad-dependent formate dehydrogenase subunit delta (7 kDa, Protein from Rhodobacter capsulatus)
- Formate dehydrogenase subunit gamma (15 kDa, Protein from Rhodobacter capsulatus)
- 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide (740 Da, Ligand)
- Molybdenum(vi) ion (95 Da, Ligand)