SARS-CoV-2 Spike in complex with neutralizing Fab 2B04 (one up, two down conformation)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7k9h
Q-score: 0.455
Errico JM, Zhao H, Chen RE, Liu Z, Case JB, Ma M, Schmitz AJ, Rau MJ, Fitzpatrick JAJ, Shi PY, Diamond MS, Whelan SPJ, Ellebedy AH, Fremont DH
Cell Rep (2021) 37 pp. 109881-109881 [ Pubmed: 34655519 DOI: doi:10.1016/j.celrep.2021.109881 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Complex of sars-cov-2 spike with fab fragments of neutralizing antibody 2b04 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2b04 heavy chain (13 kDa, Protein from Mus musculus)
- 2b04 light chain (11 kDa, Protein from Mus musculus)
- Fab fragment of neutralizing monoclonal antibody 2b04 (Complex from Homo sapiens)
SARS-CoV-2 Spike RBD in complex with neutralizing Fab 2B04 (local refinement)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7k9i
Q-score: 0.476
Errico JM, Zhao H, Chen RE, Liu Z, Case JB, Ma M, Schmitz AJ, Rau MJ, Fitzpatrick JAJ, Shi PY, Diamond MS, Whelan SPJ, Ellebedy AH, Fremont DH
Cell Rep (2021) 37 pp. 109881-109881 [ Pubmed: 34655519 DOI: doi:10.1016/j.celrep.2021.109881 ]
- 2b04 light chain (11 kDa, Protein from Mus musculus)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2b04 heavy chain (13 kDa, Protein from Mus musculus)
- Complex of sars-cov-2 spike with fab fragment of monoclonal antibody 2b04 (Complex)
- Fab fragment of monoclonal antibody 2b04 (Complex from Mus musculus)
SARS-CoV-2 Spike in complex with neutralizing Fab 2H04 (three down conformation)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7k9j
Q-score: 0.457
Errico JM, Zhao H, Chen RE, Liu Z, Case JB, Ma M, Schmitz AJ, Rau MJ, Fitzpatrick JAJ, Shi PY, Diamond MS, Whelan SPJ, Ellebedy AH, Fremont DH
Cell Rep (2021) 37 pp. 109881-109881 [ Pubmed: 34655519 DOI: doi:10.1016/j.celrep.2021.109881 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2h04 light chain (11 kDa, Protein from Mus musculus)
- 2h04 heavy chain (13 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab fragments of neutralizing antibody 2h04 (Complex from Mus musculus)
- Complex of sars-cov-2 spike with fab fragments of neutralizing antibody 2h04 (Complex)
SARS-CoV-2 Spike RBD in complex with neutralizing Fab 2H04 (local refinement)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7k9k
Q-score: 0.475
Errico JM, Zhao H, Chen RE, Liu Z, Case JB, Ma M, Schmitz AJ, Rau MJ, Fitzpatrick JAJ, Shi PY, Diamond MS, Whelan SPJ, Ellebedy AH, Fremont DH
Cell Rep (2021) 37 pp. 109881-109881 [ Pubmed: 34655519 DOI: doi:10.1016/j.celrep.2021.109881 ]
- 2h04 light chain (11 kDa, Protein from Mus musculus)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2h04 heavy chain (13 kDa, Protein from Mus musculus)
- Fab fragment of monoclonal antibody 2h04 (Complex from Mus musculus)
- Complex of sars-cov-2 spike rbd with fab fragment of monoclonal antibody 2h04 (Complex)
SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-38 (three down conformation)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7mkl
Q-score: 0.228
VanBlargan LA, Adams LJ, Liu Z, Chen RE, Gilchuk P, Raju S, Smith BK, Zhao H, Case JB, Winkler ES, Whitener BM, Droit L, Aziati ID, Bricker TL, Joshi A, Shi PY, Creanga A, Pegu A, Handley SA, Wang D, Boon ACM, Crowe Jr JE, Whelan SPJ, Fremont DH, Diamond MS
Immunity (2021) 54 pp. 2399-2416.e6 [ DOI: doi:10.1016/j.immuni.2021.08.016 Pubmed: 34481543 ]
- Sars2-38 fv heavy chain (12 kDa, Protein from Mus musculus)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars2-38 fv light chain (11 kDa, Protein from Mus musculus)
- Sars-cov-2 spike bound by sars2-38 antibody fab (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Spike RBD in complex with neutralizing Fab SARS2-38 (local refinement)
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 7mkm
Q-score: 0.3
VanBlargan LA, Adams LJ, Liu Z, Chen RE, Gilchuk P, Raju S, Smith BK, Zhao H, Case JB, Winkler ES, Whitener BM, Droit L, Aziati ID, Bricker TL, Joshi A, Shi PY, Creanga A, Pegu A, Handley SA, Wang D, Boon ACM, Crowe Jr JE, Whelan SPJ, Fremont DH, Diamond MS
Immunity (2021) 54 pp. 2399-2416.e6 [ DOI: doi:10.1016/j.immuni.2021.08.016 Pubmed: 34481543 ]
- Sars2-38 fv heavy chain (12 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars2-38 fv light chain (11 kDa, Protein from Mus musculus)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike bound by sars2-38 antibody fab (Complex from Severe acute respiratory syndrome coronavirus 2)