SARS-CoV-2 spike glycoprotein in complex with the ICO-hu23 neutralizing antibody Fab fragment
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8elj
Q-score: 0.343
Hermet P, Delache B, Herate C, Wolf E, Kivi G, Juronen E, Mumm K, Zusinaite E, Kainov D, Sankovski E, Virumae K, Planken A, Merits A, Besaw JE, Yee AW, Morizumi T, Kim K, Kuo A, Berriche A, Dereuddre-Bosquet N, Sconosciuti Q, Naninck T, Relouzat F, Cavarelli M, Ustav M, Wilson D, Ernst OP, Mannik A, LeGrand R, Ustav Jr M
PLoS Pathog (2023) 19 pp. e1011532-e1011532 [ DOI: doi:10.1371/journal.ppat.1011532 Pubmed: 37531329 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike glycoprotein (Cellular component from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein in complex with the ico-hu23 antibody fab fragment (Complex)
- Ico-hu23 antibody fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ico-hu23 antibody fab fragment (Cellular component from Homo sapiens)
- Ico-hu23 antibody fab light chain (22 kDa, Protein from Homo sapiens)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6m62
Q-score: 0.489
Micic J, Li Y, Wu S, Wilson D, Tutuncuoglu B, Gao N, Woolford Jr JL
Nat Commun (2020) 11 pp. 3751-3751 [ DOI: doi:10.1038/s41467-020-17534-5 Pubmed: 32719344 ]
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein nop53 (52 kDa, Protein from Saccharomyces cerevisiae S288c)
- Nuclear gtp-binding protein nug1 (57 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae S288c)
- Eukaryotic pre-60s ribosomal subunits (Complex from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae S288c)
- Bud site selection protein 20 (18 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein nsa2 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae S288c)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Nucleolar gtp-binding protein 2 (55 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- Its2-1 miscrna (74 kDa, RNA from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- Pescadillo homolog (69 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- Probable metalloprotease arx1 (65 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome assembly protein 4 (57 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Saccharomyces cerevisiae S288c)
- Zinc ion (65 Da, Ligand)
- Ribosome biogenesis protein rpf2 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae S288c)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome assembly factor mrt4 (27 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae S288c)
- Upf0642 protein ybl028c (12 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae S288c)
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae S288c)
- Rdn5-2 rrna (38 kDa, RNA from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein rlp24 (24 kDa, Protein from Saccharomyces cerevisiae S288c)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rrna-processing protein cgr1 (14 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae S288c)
- Regulator of ribosome biosynthesis (23 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae S288c)
- Rdn25-1 rrna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
- Rdn58-1 rrna (50 kDa, RNA from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Saccharomyces cerevisiae S288c)
Eukaryotic pre-60S ribosomal subunits from Saccharomyces cerevisiae Sda1 depletion strain, E2 state
Micic J, Li Y, Wu S, Wilson D, Tutuncuoglu B, Gao N, Woolford Jr JL
Nat Commun (2020) 11 pp. 3751-3751 [ DOI: doi:10.1038/s41467-020-17534-5 Pubmed: 32719344 ]
Micic J, Li Y, Wu S, Wilson D, Tutuncuoglu B, Gao N, Woolford Jr JL
Nat Commun (2020) 11 pp. 3751-3751 [ DOI: doi:10.1038/s41467-020-17534-5 Pubmed: 32719344 ]
Micic J, Li Y, Wu S, Wilson D, Tutuncuoglu B, Gao N, Woolford Jr JL
Nat Commun (2020) 11 pp. 3751-3751 [ DOI: doi:10.1038/s41467-020-17534-5 Pubmed: 32719344 ]
Micic J, Li Y, Wu S, Wilson D, Tutuncuoglu B, Gao N, Woolford Jr JL
Nat Commun (2020) 11 pp. 3751-3751 [ DOI: doi:10.1038/s41467-020-17534-5 Pubmed: 32719344 ]
Eukaryotic pre-60S ribosomal subunits from Saccharomyces cerevisiae Sda1 depletion strain, E1 state
Micic J, Li Y, Wu S, Wilson D, Tutuncuoglu B, Gao N, Woolford Jr JL
Nat Commun (2020) 11 pp. 3751-3751 [ DOI: doi:10.1038/s41467-020-17534-5 Pubmed: 32719344 ]
Structural basis for targeting and elongation arrest of Bacillus signal recognition particle
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 4ue4
Q-score: 0.098
Beckert B, Kedrov A, Sohmen D, Kempf G, Wild K, Sinning I, Stahlberg H, Wilson D N, Beckmann R
Nat Struct Mol Biol (2015) 22 pp. 767-773 [ Pubmed: 26344568 DOI: doi:10.1038/nsmb.3086 ]
Structural basis for targeting and elongation arrest of Bacillus signal recognition particle
Resolution: 9.0 Å
EM Method: Single-particle
Fitted PDBs: 4ue5
Q-score: 0.084
Beckert B, Kedrov A, Sohmen D, Kempf G, Wild K, Sinning I, Stahlberg H, Wilson D N, Beckmann R
Nat Struct Mol Biol (2015) 22 pp. 767-773 [ Pubmed: 26344568 DOI: doi:10.1038/nsmb.3086 ]