cytochrome bd-II type oxidase with bound aurachin D
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ose
Q-score: 0.506
Grauel A, Kagi J, Rasmussen T, Makarchuk I, Oppermann S, Moumbock AFA, Wohlwend D, Muller R, Melin F, Gunther S, Hellwig P, Bottcher B, Friedrich T
Nat Commun (2021) 12 pp. 6498-6498 [ DOI: doi:10.1038/s41467-021-26835-2 Pubmed: 34764272 ]
- Cytochrome bd-ii ubiquinol oxidase subunit 2 (42 kDa, Protein from Escherichia coli BW25113)
- Water (18 Da, Ligand)
- Aurachin d (363 Da, Ligand)
- Heme b/c (618 Da, Ligand)
- Cis-heme d hydroxychlorin gamma-spirolactone (632 Da, Ligand)
- Putative cytochrome bd-ii ubiquinol oxidase subunit appx (3 kDa, Protein from Escherichia coli BW25113)
- Cytochrome bd-ii ubiquinol oxidase subunit 1 (57 kDa, Protein from Escherichia coli BW25113)
- Ubiquinone-8 (727 Da, Ligand)
- Cytochrome bd-ii ubiquinol oxidase (208 kDa, Complex from Escherichia coli BW25113)
E. coli NADH quinone oxidoreductase hydrophilic arm (CASP target)
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 7awt
Q-score: 0.564
Schimpf J, Oppermann S, Gerasimova T, Santos Seica AF, Hellwig P, Grishkovskaya I, Wohlwend D, Haselbach D, Friedrich T
Structure (2022) 30 pp. 80- [ DOI: doi:10.1016/j.str.2021.09.005 Pubmed: 34562374 ]
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Nadh quinone oxidoreductase hydrophilic arm (Complex from Escherichia coli)
- Nadh-quinone oxidoreductase subunit c/d (68 kDa, Protein from Escherichia coli)
- Nadh-quinone oxidoreductase subunit b (25 kDa, Protein from Escherichia coli)
- Nadh-quinone oxidoreductase subunit e (18 kDa, Protein from Escherichia coli)
- Iron/sulfur cluster (351 Da, Ligand)
- Nadh-quinone oxidoreductase subunit f (49 kDa, Protein from Escherichia coli)
- Nadh-quinone oxidoreductase (100 kDa, Protein from Escherichia coli)
- Nadh-quinone oxidoreductase subunit i (20 kDa, Protein from Escherichia coli)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
THE STRUCTURE OF BD OXIDASE FROM ESCHERICHIA COLI
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6rx4
Q-score: 0.478
Thesseling A, Rasmussen T, Burschel S, Wohlwend D, Kagi J, Muller R, Bottcher B, Friedrich T
Nat Commun (2019) 10 pp. 5138-5138 [ DOI: doi:10.1038/s41467-019-13122-4 Pubmed: 31723136 ]
- Water (18 Da, Ligand)
- Cytochrome bd-i ubiquinol oxidase subunit y (2 kDa, Protein from Escherichia coli K-12)
- Cytochrome bd-i ubiquinol oxidase subunit x (4 kDa, Protein from Escherichia coli (strain K12))
- Heme b/c (618 Da, Ligand)
- Cis-heme d hydroxychlorin gamma-spirolactone (632 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Cytochrome bd-i ubiquinol oxidase subunit 2 (42 kDa, Protein from Escherichia coli (strain K12))
- Cytochrome bd-i ubiquinol oxidase subunit 1 (58 kDa, Protein from Escherichia coli (strain K12))
- Bd-oxidase from escherichia coli (Complex from Escherichia coli K-12)
- Ubiquinone-8 (727 Da, Ligand)