Structure of Bre1-nucleosome complex - state3
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8t3t
Q-score: 0.535
Nat Struct Mol Biol (2023) 30 pp. 1623-1627 [ DOI: doi:10.1038/s41594-023-01137-x Pubmed: 37872231 ]
- 601 dna strand 1 (44 kDa, DNA from synthetic construct)
- E3 ubiquitin-protein ligase bre1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Bre1-nucleosome complex (Complex from Saccharomyces cerevisiae)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- 601 dna strand 2 (45 kDa, DNA from synthetic construct)
Structure of Bre1-nucleosome complex - state2
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 8t3w
Q-score: 0.52
Nat Struct Mol Biol (2023) 30 pp. 1623-1627 [ DOI: doi:10.1038/s41594-023-01137-x Pubmed: 37872231 ]
- 601 dna strand 1 (44 kDa, DNA from synthetic construct)
- E3 ubiquitin-protein ligase bre1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Bre1-nucleosome complex (Complex from Saccharomyces cerevisiae)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- 601 dna strand 2 (45 kDa, DNA from synthetic construct)
Structure of Bre1-nucleosome complex - state1
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8t3y
Q-score: 0.503
Nat Struct Mol Biol (2023) 30 pp. 1623-1627 [ DOI: doi:10.1038/s41594-023-01137-x Pubmed: 37872231 ]
- 601 dna strand 2 (45 kDa, DNA from synthetic construct)
- Bre1-nucleosome complex (Complex from Saccharomyces cerevisiae)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- 601 dna strand 1 (44 kDa, DNA from synthetic construct)
- E3 ubiquitin-protein ligase bre1 (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
Yeast COMPASS in complex with a ubiquitinated nucleosome
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6ven
Q-score: 0.449
Worden EJ, Zhang X, Wolberger C
eLife (2020) 9 [ DOI: doi:10.7554/eLife.53199 Pubmed: 31922488 ]
- Histone-lysine n-methyltransferase, h3 lysine-4 specific (41 kDa, Protein from Saccharomyces cerevisiae)
- 601 dna (146-mer) (44 kDa, DNA from synthetic construct)
- S-adenosylmethionine (398 Da, Ligand)
- Yeast compass (Complex from Saccharomyces cerevisiae)
- Ubiquitinated nucleosome (Complex from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- Compass component sdc1 (19 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Compass component swd3 (34 kDa, Protein from Saccharomyces cerevisiae)
- Ubiquitin (9 kDa, Protein from Homo sapiens)
- Compass component spp1 (45 kDa, Protein from Saccharomyces cerevisiae)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- 601 dna (146-mer) (45 kDa, DNA from synthetic construct)
- Complex between yeast compass and a ubiquitinated nucleosome (Complex)
- Compass component swd1 (48 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Compass component bre2 (58 kDa, Protein from Saccharomyces cerevisiae)