Haspin bound to nucleosome in position 1
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9b2s
Q-score: 0.536
Hicks CW, Gliech CR, Zhang X, Rahman S, Vasquez S, Holland AJ, Wolberger C
To Be Published
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Haspin bound to nucleosome (Complex from Xenopus laevis)
- Serine/threonine-protein kinase haspin (40 kDa, Protein from Homo sapiens)
- 601 dna (185-mer) (57 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- 601 dna (185-mer) (56 kDa, DNA from synthetic construct)
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 9b2u
Q-score: 0.363
Hicks CW, Gliech CR, Zhang X, Rahman S, Vasquez S, Holland AJ, Wolberger C
To Be Published
- Haspin bound to h3 tail (Complex from Xenopus laevis)
- Serine/threonine-protein kinase haspin (40 kDa, Protein from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
H2BK120ub-modified nucleosome ubiquitin position 1
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8v25
Q-score: 0.519
Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C
Nucleic Acids Res (2024) 52 pp. 9978-9995 [ Pubmed: 39149911 DOI: doi:10.1093/nar/gkae698 ]
- H2bk120ub-modified nucleosome (Complex)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (Complex from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Ubiquitin (9 kDa, Protein from Homo sapiens)
- Ubiquitin (Complex from Homo sapiens)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histones (Complex from Xenopus laevis)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
H2BK120ub-modified nucleosome ubiquitin position 2
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8v26
Q-score: 0.515
Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C
Nucleic Acids Res (2024) 52 pp. 9978-9995 [ DOI: doi:10.1093/nar/gkae698 Pubmed: 39149911 ]
- Histones (Complex from Xenopus laevis)
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Dna (Complex from synthetic construct)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- H2bk120ub-modified nucleosome (Complex)
- Ubiquitin (Complex from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Ubiquitin (9 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
H2BK120ub-modified nucleosome ubiquitin position 3
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 8v27
Q-score: 0.516
Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C
Nucleic Acids Res (2024) 52 pp. 9978-9995 [ DOI: doi:10.1093/nar/gkae698 Pubmed: 39149911 ]
- Histones (Complex from Xenopus laevis)
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Dna (Complex from synthetic construct)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- H2bk120ub-modified nucleosome (Complex)
- Ubiquitin (Complex from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Ubiquitin (9 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
H2BK120ub-modified nucleosome ubiquitin position 4
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8v28
Q-score: 0.505
Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C
Nucleic Acids Res (2024) 52 pp. 9978-9995 [ DOI: doi:10.1093/nar/gkae698 Pubmed: 39149911 ]
- Histones (Complex from Xenopus laevis)
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Dna (Complex from synthetic construct)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- H2bk120ub-modified nucleosome (Complex)
- Ubiquitin (Complex from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Ubiquitin (9 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 6
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8g6h
Q-score: 0.552
Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C
Nucleic Acids Res (2024) 52 pp. 9978-9995 [ DOI: doi:10.1093/nar/gkae698 Pubmed: 39149911 ]
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- 601 dna (185-mer) (56 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- 601 dna (185-mer) (57 kDa, DNA from synthetic construct)
- Ubiquitin (9 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- H2bk120ub+h3k79me2-modified nucleosome (Complex from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
H2AK119ub-modified nucleosome ubiquitin position 1
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8g6q
Q-score: 0.434
Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C
Nucleic Acids Res (2024) 52 pp. 9978-9995 [ DOI: doi:10.1093/nar/gkae698 Pubmed: 39149911 ]
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Ubiquitin (9 kDa, Protein from Homo sapiens)
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- H2ak119ub-modified nucleosome (Complex from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
H2AK119ub-modified nucleosome ubiquitin position 2
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8g6s
Q-score: 0.445
Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C
Nucleic Acids Res (2024) 52 pp. 9978-9995 [ Pubmed: 39149911 DOI: doi:10.1093/nar/gkae698 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Ubiquitin (9 kDa, Protein from Homo sapiens)
- H2ak119ub-modified nucleosome (Complex from Xenopus laevis)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
Structure of Bre1-nucleosome complex - state3
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8t3t
Q-score: 0.535
Nat Struct Mol Biol (2023) 30 pp. 1623-1627 [ DOI: doi:10.1038/s41594-023-01137-x Pubmed: 37872231 ]
- 601 dna strand 1 (44 kDa, DNA from synthetic construct)
- E3 ubiquitin-protein ligase bre1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Bre1-nucleosome complex (Complex from Saccharomyces cerevisiae)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- 601 dna strand 2 (45 kDa, DNA from synthetic construct)