Human p97/VCP structure with a triazole inhibitor (NSC799462/hexamer)
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8uv2
Q-score: 0.39
Nandi P, DeVore K, Wang F, Li S, Walker JD, Truong TT, LaPorte MG, Wipf P, Schlager H, McCleerey J, Paquette W, Columbres RCA, Gan T, Poh YP, Fromme P, Flint AJ, Wolf M, Huryn DM, Chou TF, Chiu PL
Commun Chem (2024) 7 pp. 177-177 [ DOI: doi:10.1038/s42004-024-01267-3 Pubmed: 39122922 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- P97/vcp aaa+ atpase/nsc799462 (536 kDa, Complex from Homo sapiens)
- 3-(4-{[(4p)-5-{[(1r)-cyclohex-2-en-1-yl]sulfanyl}-4-(pyridin-3-yl)-4h-1,2,4-triazol-3-yl]methoxy}-2,6-difluorophenyl)prop-2-yn-1-yl (1-methylpiperidin-4-yl)carbamate (594 Da, Ligand)
- Transitional endoplasmic reticulum atpase (89 kDa, Protein from Homo sapiens)
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC804515)
Nandi P, DeVore K, Wang F, Li S, Walker JD, Truong TT, LaPorte MG, Wipf P, Schlager H, McCleerey J, Paquette W, Columbres RCA, Gan T, Poh YP, Fromme P, Flint AJ, Wolf M, Huryn DM, Chou TF, Chiu PL
Commun Chem (2024) 7 pp. 177-177 [ DOI: doi:10.1038/s42004-024-01267-3 Pubmed: 39122922 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- N-[3-(2,5-difluoro-4-{[(4m)-5-(hexylsulfanyl)-4-(pyridin-3-yl)-4h-1,2,4-triazol-3-yl]methoxy}phenyl)prop-2-yn-1-yl]propanamide (513 Da, Ligand)
- Transitional endoplasmic reticulum atpase (89 kDa, Protein from Homo sapiens)
- P97/vcp aaa+ atpase r155h mutant/nsc804515 (536 kDa, Complex from Homo sapiens)
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC819701/up)
Nandi P, DeVore K, Wang F, Li S, Walker JD, Truong TT, LaPorte MG, Wipf P, Schlager H, McCleerey J, Paquette W, Columbres RCA, Gan T, Poh YP, Fromme P, Flint AJ, Wolf M, Huryn DM, Chou TF, Chiu PL
Commun Chem (2024) 7 pp. 177-177 [ DOI: doi:10.1038/s42004-024-01267-3 Pubmed: 39122922 ]
- Transitional endoplasmic reticulum atpase (89 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-[(4p)-4-(4-{[(4p)-5-(cyclohexylsulfanyl)-4-(pyridin-3-yl)-4h-1,2,4-triazol-3-yl]methoxy}-2,5-difluorophenyl)-2h-1,2,3-triazol-2-yl]-1-[(2r,6s)-2,6-dimethylmorpholin-4-yl]ethan-1-one (624 Da, Ligand)
- P97/vcp aaa+ atpase r155h mutant/nsc819701 (536 kDa, Complex from Homo sapiens)
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC819701/down)
Nandi P, DeVore K, Wang F, Li S, Walker JD, Truong TT, LaPorte MG, Wipf P, Schlager H, McCleerey J, Paquette W, Columbres RCA, Gan T, Poh YP, Fromme P, Flint AJ, Wolf M, Huryn DM, Chou TF, Chiu PL
Commun Chem (2024) 7 pp. 177-177 [ DOI: doi:10.1038/s42004-024-01267-3 Pubmed: 39122922 ]
- Transitional endoplasmic reticulum atpase (89 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-[(4p)-4-(4-{[(4p)-5-(cyclohexylsulfanyl)-4-(pyridin-3-yl)-4h-1,2,4-triazol-3-yl]methoxy}-2,5-difluorophenyl)-2h-1,2,3-triazol-2-yl]-1-[(2r,6s)-2,6-dimethylmorpholin-4-yl]ethan-1-one (624 Da, Ligand)
- P97/vcp aaa+ atpase r155h mutant/nsc819701 (536 kDa, Complex from Homo sapiens)
Human p97/VCP structure with a triazole inhibitor (NSC799462/dodecamer)
Nandi P, DeVore K, Wang F, Li S, Walker JD, Truong TT, LaPorte MG, Wipf P, Schlager H, McCleerey J, Paquette W, Columbres RCA, Gan T, Poh YP, Fromme P, Flint AJ, Wolf M, Huryn DM, Chou TF, Chiu PL
Commun Chem (2024) 7 pp. 177-177 [ DOI: doi:10.1038/s42004-024-01267-3 Pubmed: 39122922 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 3-(2,6-difluoro-4-{[(4p)-5-{[(2s)-hexan-2-yl]sulfanyl}-4-(pyridin-3-yl)-4h-1,2,4-triazol-3-yl]methoxy}phenyl)prop-2-yn-1-yl (1-methylpiperidin-4-yl)carbamate (598 Da, Ligand)
- P97/vcp aaa+ atpase/nsc799462 (536 kDa, Complex from Homo sapiens)
- Transitional endoplasmic reticulum atpase (89 kDa, Protein from Homo sapiens)
Capsid of DT57C bacteriophage in the full state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ho3
Q-score: 0.524
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- Major head protein (50 kDa, Protein from Escherichia phage DT57C)
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
Capsid of DT57C bacteriophage in the empty state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8hqk
Q-score: 0.507
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- Major head protein (50 kDa, Protein from Escherichia phage DT57C)
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
Neck of DT57C bacteriophage in the full state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8hqo
Q-score: 0.441
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- Tape measure protein (132 kDa, Protein from Escherichia phage DT57C)
- Portal protein (45 kDa, Protein from Escherichia phage DT57C)
- Head completion protein (19 kDa, Protein from Escherichia phage DT57C)
- Tail terminator protein (18 kDa, Protein from Escherichia phage DT57C)
- Tequintavirus dt57c (Virus from Tequintavirus DT57C)
Baseplate of DT57C bacteriophage in the full state
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8hqz
Q-score: 0.446
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- Minor tail protein (34 kDa, Protein from Escherichia phage DT57C)
- Tape measure protein (132 kDa, Protein from Escherichia phage DT57C)
- Distal tail protein (22 kDa, Protein from Escherichia phage DT57C)
- Tail tube protein (50 kDa, Protein from Escherichia phage DT57C)
- Baseplate hub protein (107 kDa, Protein from Escherichia phage DT57C)
- L-shaped tail fiber assembly (15 kDa, Protein from Escherichia phage DT57C)
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
- L-shaped tail fiber assembly (113 kDa, Protein from Escherichia phage DT57C)
Straight fiber of DT57C bacteriophage in the full state
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 8hre
Q-score: 0.136
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- Central straight fiber (74 kDa, Protein from Escherichia phage DT57C)
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)