The local refined map of Omicron spike with bispecific antibody FD01
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 7wop
Q-score: 0.318
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- 16l9 (25 kDa, Protein from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Gw01 (26 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 and gw01 (Complex from Homo sapiens)
The state 1 of Omicron Spike with bispecific antibody FD01
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 7woq
Q-score: 0.322
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- 16l9 fv (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 fv (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
The state 2 of Omicron Spike with bispecific antibody FD01
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wor
Q-score: 0.236
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 and gw01 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
The state 3 of Omicron Spike with bispecific antibody FD01
Resolution: 3.91 Å
EM Method: Single-particle
Fitted PDBs: 7wos
Q-score: 0.235
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 and gw01 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
The state 4 of Omicron Spike with bispecific antibody FD01
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 7wou
Q-score: 0.24
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 and gw01 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
The state 5 of Omicron Spike with bispecific antibody FD01
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 7wov
Q-score: 0.185
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 and gw01 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
The state 6 of Omicron Spike with bispecific antibody FD01
Resolution: 6.11 Å
EM Method: Single-particle
Fitted PDBs: 7wow
Q-score: 0.102
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 and gw01 (Complex from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
S protein of SARS-CoV-2 in complex with GW01
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7epx
Q-score: 0.347
Wang Y, Liu M, Shen Y, Ma Y, Li X, Zhang Y, Liu M, Yang XL, Chen J, Yan R, Luan D, Wang Y, Chen Y, Wang Q, Lin H, Li Y, Wu K, Zhu T, Zhao J, Lu H, Wen Y, Jiang S, Wu F, Zhou Q, Shi ZL, Huang J
Cell Discov (2022) 8 pp. 36-36 [ DOI: doi:10.1038/s41421-022-00401-6 Pubmed: 35443747 ]
- Fab gw01 (Complex)
- Light chain of gw01 (22 kDa, Protein from Homo sapiens)
- Spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of gw01 (49 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S protein of sars-cov-2 in complex with gw01 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Local map of S protein of SARS-CoV-2 in complex with GW01 Focused on RND-GW01 sub_complex