Cryo-EM structure of phosphoketolase from Bifidobacterium longum in octameric assembly
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8io6
Q-score: 0.548
Lu KJ, Chang CW, Wang CH, Chen FY, Huang IY, Huang PH, Yang CH, Wu HY, Wu WJ, Hsu KC, Ho MC, Tsai MD, Liao JC
Nat Metab (2023) 5 pp. 1111-1126 [ Pubmed: 37349485 DOI: doi:10.1038/s42255-023-00831-w ]
- Xylulose5phosphatefructose6phosphate phosphoketolase (92 kDa, Protein from Bifidobacterium longum subsp. longum F8)
- Bifidobacterium longum xfpk in complex with tpp/mg2+ (750 kDa, Complex from Bifidobacteriaceae bacterium)
- Magnesium ion (24 Da, Ligand)
- Thiamine diphosphate (425 Da, Ligand)
Cryo-EM structure of phosphoketolase from Bifidobacterium longum in dimeric assembly
Resolution: 2.62 Å
EM Method: Single-particle
Fitted PDBs: 8io7
Q-score: 0.558
Lu KJ, Chang CW, Wang CH, Chen FY, Huang IY, Huang PH, Yang CH, Wu HY, Wu WJ, Hsu KC, Ho MC, Tsai MD, Liao JC
Nat Metab (2023) 5 pp. 1111-1126 [ Pubmed: 37349485 DOI: doi:10.1038/s42255-023-00831-w ]
- Xylulose5phosphatefructose6phosphate phosphoketolase (92 kDa, Protein from Bifidobacterium longum subsp. longum F8)
- Bifidobacterium longum xfpk in complex with tpp/mg2+ (750 kDa, Complex from Bifidobacteriaceae bacterium)
- Magnesium ion (24 Da, Ligand)
- Thiamine diphosphate (425 Da, Ligand)
Cryo-EM structure of cyanobacteria phosphoketolase complexed with AMPPNP in dimeric assembly
Resolution: 2.17 Å
EM Method: Single-particle
Fitted PDBs: 8io8
Q-score: 0.653
Lu KJ, Chang CW, Wang CH, Chen FY, Huang IY, Huang PH, Yang CH, Wu HY, Wu WJ, Hsu KC, Ho MC, Tsai MD, Liao JC
Nat Metab (2023) 5 pp. 1111-1126 [ Pubmed: 37349485 DOI: doi:10.1038/s42255-023-00831-w ]
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Thiamine diphosphate (425 Da, Ligand)
- Probable phosphoketolase (89 kDa, Protein from Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805))
- Synechococcus elongatus pcc 7942 xpk complexed with amppnp (890 kDa, Complex from Synechococcus)
Cryo-EM structure of cyanobacteria phosphoketolase complexed with AMPPNPin dodecameric assembly
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8io9
Q-score: 0.556
Lu KJ, Chang CW, Wang CH, Chen FY, Huang IY, Huang PH, Yang CH, Wu HY, Wu WJ, Hsu KC, Ho MC, Tsai MD, Liao JC
Nat Metab (2023) 5 pp. 1111-1126 [ Pubmed: 37349485 DOI: doi:10.1038/s42255-023-00831-w ]
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Thiamine diphosphate (425 Da, Ligand)
- Cyanobacteria phosphoketolase complexed with amppnp (890 kDa, Complex from Synechococcus)
- Probable phosphoketolase (89 kDa, Protein from Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805))
Cryo-EM structure of cyanobacteria phosphoketolase
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 8ioa
Q-score: 0.572
Lu KJ, Chang CW, Wang CH, Chen FY, Huang IY, Huang PH, Yang CH, Wu HY, Wu WJ, Hsu KC, Ho MC, Tsai MD, Liao JC
Nat Metab (2023) 5 pp. 1111-1126 [ Pubmed: 37349485 DOI: doi:10.1038/s42255-023-00831-w ]
- Magnesium ion (24 Da, Ligand)
- Probable phosphoketolase (89 kDa, Protein from Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805))
- Cyanobacteria xpk complexed with tpp/mg2+ (890 kDa, Complex from Synechococcus)
- Thiamine diphosphate (425 Da, Ligand)
Cryo-EM structure of cyanobacteria phosphoketolase in dodecameric assembly
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8ioe
Q-score: 0.486
Lu KJ, Chang CW, Wang CH, Chen FY, Huang IY, Huang PH, Yang CH, Wu HY, Wu WJ, Hsu KC, Ho MC, Tsai MD, Liao JC
Nat Metab (2023) 5 pp. 1111-1126 [ Pubmed: 37349485 DOI: doi:10.1038/s42255-023-00831-w ]
- Magnesium ion (24 Da, Ligand)
- Probable phosphoketolase (89 kDa, Protein from Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805))
- Cyanobacteria xpk complexed with tpp/mg2+ (890 kDa, Complex from Synechococcus)
- Thiamine diphosphate (425 Da, Ligand)