protomer structure from the dimer of yeast THO complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7v2w
Q-score: 0.479
Chen C, Tan M, Wu Z, Zhang Y, He F, Lu Y, Li S, Cao M, Li G, Wu J, Cheng H, Lei M
Sci Bull (Beijing) (2021) 66 pp. 2347-2352 [ DOI: doi:10.1016/j.scib.2021.08.004 Pubmed: 36654119 ]
- Tho complex subunit 2 (184 kDa, Protein from Saccharomyces cerevisiae S288c)
- Tho complex (Complex from Saccharomyces cerevisiae S288c)
- Tho complex subunit thp2 (30 kDa, Protein from Saccharomyces cerevisiae S288c)
- Tho complex subunit hpr1 (87 kDa, Protein from Saccharomyces cerevisiae S288c)
- Tho complex subunit mft1 (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- Protein tex1 (47 kDa, Protein from Saccharomyces cerevisiae S288c)
cryo-EM structure of yeast THO complex with Sub2
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7v2y
Q-score: 0.431
Chen C, Tan M, Wu Z, Zhang Y, He F, Lu Y, Li S, Cao M, Li G, Wu J, Cheng H, Lei M
Sci Bull (Beijing) (2021) 66 pp. 2347-2352 [ DOI: doi:10.1016/j.scib.2021.08.004 Pubmed: 36654119 ]
- Tho complex subunit 2 (184 kDa, Protein from Saccharomyces cerevisiae S288c)
- Tho-sub2 complex (Complex from Saccharomyces cerevisiae S288c)
- Sub2 (Complex)
- Tho complex subunit thp2 (30 kDa, Protein from Saccharomyces cerevisiae S288c)
- Tho complex subunit hpr1 (87 kDa, Protein from Saccharomyces cerevisiae S288c)
- Atp-dependent rna helicase sub2 (50 kDa, Protein from Saccharomyces cerevisiae S288c)
- Tho complex subunit mft1 (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- Protein tex1 (47 kDa, Protein from Saccharomyces cerevisiae S288c)
- Yeast tho (Complex from Saccharomyces cerevisiae S288c)
catalytic core of human telomerase holoenzyme
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 7v99
Q-score: 0.247
Wan F, Ding Y, Zhang Y, Wu Z, Li S, Yang L, Yan X, Lan P, Li G, Wu J, Lei M
Cell Res (2021) 31 pp. 1275-1290 [ Pubmed: 34782750 DOI: doi:10.1038/s41422-021-00586-7 ]
- Telomerase reverse transcriptase (127 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Telomerase rna component (145 kDa, RNA from Homo sapiens)
- Primer dna (7 kDa, DNA from Homo sapiens)
- Catalytic core (Complex from Homo sapiens)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
masked histone region in the catalytic core of human telomerase holoenzyme
Wan F, Ding Y, Zhang Y, Wu Z, Li S, Yang L, Yan X, Lan P, Li G, Wu J, Lei M
Cell Res (2021) 31 pp. 1275-1290 [ Pubmed: 34782750 DOI: doi:10.1038/s41422-021-00586-7 ]
- Primer dna (DNA from Homo sapiens)
- Histone h2b type 1-k (Protein from Homo sapiens)
- Telomerase rna component (RNA from Homo sapiens)
- Histone h2a type 1-b/e (Protein from Homo sapiens)
- Telomerase reverse transcriptase (Protein from Homo sapiens)
- Catalytic core (Complex from Homo sapiens)
biogenesis module of human telomerase holoenzyme
Resolution: 3.94 Å
EM Method: Single-particle
Fitted PDBs: 7v9a
Q-score: 0.254
Wan F, Ding Y, Zhang Y, Wu Z, Li S, Yang L, Yan X, Lan P, Li G, Wu J, Lei M
Cell Res (2021) 31 pp. 1275-1290 [ Pubmed: 34782750 DOI: doi:10.1038/s41422-021-00586-7 ]
- Biogenesis module (Complex from Homo sapiens)
- H/aca ribonucleoprotein complex subunit dkc1 (57 kDa, Protein from Homo sapiens)
- H/aca ribonucleoprotein complex subunit 2 (17 kDa, Protein from Homo sapiens)
- Telomerase rna component (145 kDa, RNA from Homo sapiens)
- H/aca ribonucleoprotein complex subunit 3 (7 kDa, Protein from Homo sapiens)
- Telomerase cajal body protein 1 (59 kDa, Protein from Homo sapiens)
- H/aca ribonucleoprotein complex subunit 1 (22 kDa, Protein from Homo sapiens)
masked 5' tail of RNA in biogenesis module of human telomerase holoenzyme
Wan F, Ding Y, Zhang Y, Wu Z, Li S, Yang L, Yan X, Lan P, Li G, Wu J, Lei M
Cell Res (2021) 31 pp. 1275-1290 [ Pubmed: 34782750 DOI: doi:10.1038/s41422-021-00586-7 ]
- Biogenesis module (Complex from Homo sapiens)
- H/aca ribonucleoprotein complex subunit 2 (Protein from Homo sapiens)
- H/aca ribonucleoprotein complex subunit 1 (Protein from Homo sapiens)
- Telomerase cajal body protein 1 (Protein from Homo sapiens)
- Telomerase rna component (DNA from Homo sapiens)
- H/aca ribonucleoprotein complex subunit dkc1 (Protein from Homo sapiens)
- H/aca ribonucleoprotein complex subunit 3 (Protein from Homo sapiens)
cryo-EM structure of human RNA polymerase III in elongating state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7d58
Q-score: 0.014
Wang Q, Li S, Wan F, Xu Y, Wu Z, Cao M, Lan P, Lei M, Wu J
Nat Struct Mol Biol (2021) 28 pp. 220-227 [ DOI: doi:10.1038/s41594-021-00557-x Pubmed: 33558766 ]
- Dna-directed rna polymerase iii subunit rpc6 (35 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc7 (25 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc9 (16 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc2 (127 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc1 (155 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc3 (60 kDa, Protein from Homo sapiens)
- Rna (6 kDa, RNA from Homo sapiens)
- Human pol3 ec (Complex from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc5 (80 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
- Template dna (12 kDa, DNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Non-template dna (12 kDa, DNA from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc8 (22 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc4 (44 kDa, Protein from Homo sapiens)
cryo-EM structure of human RNA polymerase III in apo state
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7d59
Q-score: 0.391
Wang Q, Li S, Wan F, Xu Y, Wu Z, Cao M, Lan P, Lei M, Wu J
Nat Struct Mol Biol (2021) 28 pp. 220-227 [ DOI: doi:10.1038/s41594-021-00557-x Pubmed: 33558766 ]
- Dna-directed rna polymerase iii subunit rpc6 (35 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc7 (25 kDa, Protein from Homo sapiens)
- Rna pol3 apo (Complex from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc9 (16 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc2 (127 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc1 (155 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc3 (60 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc5 (80 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc8 (22 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc4 (44 kDa, Protein from Homo sapiens)
cryo-EM structure of cyanobacteria Fd-NDH-1L complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6l7o
Q-score: 0.433
Zhang C, Shuai J, Ran Z, Zhao J, Wu Z, Liao R, Wu J, Ma W, Lei M
Nat Commun (2020) 11 pp. 888-888 [ DOI: doi:10.1038/s41467-020-14732-z Pubmed: 32060291 ]
- Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Digitonin (1 kDa, Ligand)
- Phylloquinone (450 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nad(p)h-quinone oxidoreductase chain 4 1 (57 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit p (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Beta-carotene (536 Da, Ligand)
- Nadh dehydrogenase subunit 5 (72 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit q (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 1 (40 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Ferredoxin-1 (10 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Tlr0472 protein (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Fd-ndh-1l complex (Complex from Thermosynechococcus elongatus BP-1)
- Nadh-quinone oxidoreductase subunit j (21 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Iron/sulfur cluster (351 Da, Ligand)
cryo-EM structure of cyanobacteria NDH-1LdelV complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6l7p
Q-score: 0.426
Zhang C, Shuai J, Ran Z, Zhao J, Wu Z, Liao R, Wu J, Ma W, Lei M
Nat Commun (2020) 11 pp. 888-888 [ DOI: doi:10.1038/s41467-020-14732-z Pubmed: 32060291 ]
- Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Digitonin (1 kDa, Ligand)
- Phylloquinone (450 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase chain 4 1 (57 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit p (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Beta-carotene (536 Da, Ligand)
- Ndh-1ldelv (Complex from Thermosynechococcus elongatus BP-1)
- Nadh dehydrogenase subunit 5 (72 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit q (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 1 (40 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nadh-quinone oxidoreductase subunit j (21 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Iron/sulfur cluster (351 Da, Ligand)