The state 2 complex structure of Omicron spike with Bn03 (2-up RBD, 4 nanobodies)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7whi
Q-score: 0.377
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ DOI: doi:10.1016/j.cell.2022.03.009 Pubmed: 35344711 ]
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- The state 2 complex structure of omicron spike with bn03 (2-up rbd, 4 nanobodies) (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Bn03 (Complex from Homo sapiens)
The state 1 complex structure of Omicron spike with Bn03 (1-up RBD, 3 nanobodies)
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 7whj
Q-score: 0.38
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ DOI: doi:10.1016/j.cell.2022.03.009 Pubmed: 35344711 ]
- The state 1 complex structure of omicron spike with bn03 (1-up rbd, 3 nanobodies) (Complex)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Bn03 (Complex from Homo sapiens)
The state 3 complex structure of Omicron spike with Bn03 (2-up RBD, 5 nanobodies)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7whk
Q-score: 0.37
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ DOI: doi:10.1016/j.cell.2022.03.009 Pubmed: 35344711 ]
- Omicron spike with bn03 (Complex)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Bn03 (Complex from Homo sapiens)
RBD-1 of SARS-CoV-2 Beta spike in complex with S5D2 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wcr
Q-score: 0.354
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Rbd-1 of sars-cov-2 beta spike in complex with s5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
SARS-CoV-2 Beta spike in complex with one S5D2 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wcz
Q-score: 0.256
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 beta spike in complex with one s5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
SARS-CoV-2 Beta spike in complex with two S5D2 Fabs
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7wd0
Q-score: 0.291
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Sars-cov-2 beta spike in complex with two s5d2 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
SARS-CoV-2 Beta spike in complex with three S5D2 Fabs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wd7
Q-score: 0.22
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s5d2 fab (Complex from Mus musculus)
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Sars-cov-2 beta spike in complex with two s5d2 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
SARS-CoV-2 Beta spike SD1 in complex with S3H3 Fab
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7wd8
Q-score: 0.28
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Partial spike of sars-cov-2 beta variant (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s3h3 fab (Complex from Mus musculus)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)
SARS-CoV-2 Beta spike in complex with three S3H3 Fabs
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wd9
Q-score: 0.204
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s3h3 fab (Complex)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)