Lodwick JE, Shen R, Erramilli S, Xie Y, Roganowicz K, Kossiakoff AA, Zhao M
bioRxiv (2024) [ Pubmed: 38979142 DOI: doi:10.1101/2024.06.27.601040 ]
- Major vault protein (99 kDa, Protein from Homo sapiens)
- Oligomerized human mvp (7 MDa, Complex from Homo sapiens)
Human Vault Cage in complex with NAD+
Lodwick JE, Shen R, Erramilli S, Xie Y, Roganowicz K, Kossiakoff AA, Zhao M
bioRxiv (2024) [ Pubmed: 38979142 DOI: doi:10.1101/2024.06.27.601040 ]
Human Vault Cage in complex with PARP4
Lodwick JE, Shen R, Erramilli S, Xie Y, Roganowicz K, Kossiakoff AA, Zhao M
bioRxiv (2024) [ Pubmed: 38979142 DOI: doi:10.1101/2024.06.27.601040 ]
- Binary complex of human parp4 bound to oligomerized human mvp (12 MDa, Complex from Homo sapiens)
- Major vault protein (99 kDa, Protein from Homo sapiens)
- Protein mono-adp-ribosyltransferase parp4 (192 kDa, Protein from Homo sapiens)
Human Vault Cage in complex with PARP4 and NAD+
Lodwick JE, Shen R, Erramilli S, Xie Y, Roganowicz K, Kossiakoff AA, Zhao M
bioRxiv (2024) [ Pubmed: 38979142 DOI: doi:10.1101/2024.06.27.601040 ]
- Ternary complex of nad+ and human parp4 bound to oligomerized human mvp (12 MDa, Complex from Homo sapiens)
- Protein mono-adp-ribosyltransferase parp4 (192 kDa, Protein from Homo sapiens)
- Major vault protein (99 kDa, Protein from Homo sapiens)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Human Vault Cage in the presence of ADP
Lodwick JE, Shen R, Erramilli S, Xie Y, Roganowicz K, Kossiakoff AA, Zhao M
bioRxiv (2024) [ Pubmed: 38979142 DOI: doi:10.1101/2024.06.27.601040 ]
- Oligomerized human mvp in the presence of adp (7 MDa, Complex from Homo sapiens)
- Major vault protein (Protein from Homo sapiens)
Human Vault Cage in complex with the MINT domain of PARP4
Lodwick JE, Shen R, Erramilli S, Xie Y, Roganowicz K, Kossiakoff AA, Zhao M
bioRxiv (2024) [ Pubmed: 38979142 DOI: doi:10.1101/2024.06.27.601040 ]
Cryo-EM structure of the CBC-ALYREF complex
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8srr
Q-score: 0.458
Clarke BP, Angelos AE, Mei M, Hill PS, Xie Y, Ren Y
eLife (2024) 12 [ DOI: doi:10.7554/eLife.91432 Pubmed: 39282949 ]
- Nuclear cap-binding protein subunit 2 (18 kDa, Protein from Homo sapiens)
- Cryo-em structure of an mrna export factor (Complex from Homo sapiens)
- Nuclear cap-binding protein subunit 1 (91 kDa, Protein from Homo sapiens)
- Rna and export factor binding protein 2 (17 kDa, Protein from Mus musculus)
- 7n-methyl-8-hydroguanosine-5'-diphosphate (458 Da, Ligand)
Cryo-EM structure of the human cap binding complex (CBC)
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 8suy
Q-score: 0.43
Clarke BP, Angelos AE, Mei M, Hill PS, Xie Y, Ren Y
eLife (2024) 12 [ DOI: doi:10.7554/eLife.91432 Pubmed: 39282949 ]
- Nuclear cap-binding protein subunit 2 (18 kDa, Protein from Homo sapiens)
- Cryo-em structure of an mrna export factor (Complex from Homo sapiens)
- Nuclear cap-binding protein subunit 1 (91 kDa, Protein from Homo sapiens)
- 7n-methyl-8-hydroguanosine-5'-diphosphate (458 Da, Ligand)
SARS-CoV-2 Omicron BQ.1.1 RBD complexed with human ACE2
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 8wdy
Q-score: 0.511
Li W, Xu Z, Niu T, Xie Y, Zhao Z, Li D, He Q, Sun W, Shi K, Guo W, Chang Z, Liu K, Fan Z, Qi J, Gao GF
EMBO J (2024) 43 pp. 1484-1498 [ DOI: doi:10.1038/s44318-024-00062-z Pubmed: 38467833 ]
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ace2 (Complex from Homo sapiens)
- Sars-cov-2 omicron bq.1.1 rbd complexed with human ace2 (Complex)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
- Bq.1.1 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 Omicron BQ.1 RBD complexed with human ACE2
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 8wdz
Q-score: 0.508
Li W, Xu Z, Niu T, Xie Y, Zhao Z, Li D, He Q, Sun W, Shi K, Guo W, Chang Z, Liu K, Fan Z, Qi J, Gao GF
EMBO J (2024) 43 pp. 1484-1498 [ DOI: doi:10.1038/s44318-024-00062-z Pubmed: 38467833 ]
- Sars-cov-2 omicron bq.1 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ace2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron bq.1 rbd complexed with human ace2 (Complex)