Edit your search query here and hit Return to execute it:
primary_citation_author:"Xin YH"
structure of phage T6 topoisomerase II central domain bound with DNA
Release date: Sept. 25, 2024
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ylu
Q-score: 0.592
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ylu
Q-score: 0.592
To Be Published
Sample:
- Dna(5'-d(p*tp*gp*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*tp*ap)) (6 kDa, DNA from DNA molecule)
- Phage t6 topoisomerase ii central domian bound with g-segment dna (Complex from Enterobacteria phage T6)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Salmonella phage Chi)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(p*tp*ap*tp*ap*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*cp*a)-3') (6 kDa, DNA from DNA molecule)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
structure of phage T6 topoisomerase II ATPase domain bound with AMPPNP
Release date: Sept. 25, 2024
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8yo1
Q-score: 0.414
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8yo1
Q-score: 0.414
To Be Published
Sample:
- Phage t6 topoisomerase ii atpase domain bound with amppnp (Complex from Enterobacteria phage T6)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
structure of phage T4 topoisomerase II central domain
Release date: Sept. 25, 2024
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8yo3
Q-score: 0.427
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8yo3
Q-score: 0.427
To Be Published
Sample:
structure of phage T4 topoisomerase II central domain bound with DNA
Release date: Sept. 25, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8yo4
Q-score: 0.508
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8yo4
Q-score: 0.508
To Be Published
Sample:
- Phage t4 topoisomerase ii gp39-gp60 subunit (77 kDa, Protein from Escherichia phage T4)
- Dna (5'-d(p*ap*tp*ap*tp*ap*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*cp*ap*t)-3') (15 kDa, DNA from DNA molecule)
- Dna (5'-d(p*tp*gp*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*tp*ap*tp*a)-3') (16 kDa, DNA from DNA molecule)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Phage t4 topoisomerase ii central domian bound with g-segment dna (Complex from Escherichia phage T4)
structure of phage T6 topoisomerase II central domain
Release date: Sept. 25, 2024
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8yo5
Q-score: 0.408
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8yo5
Q-score: 0.408
To Be Published
Sample:
structure of phage T6 topoisomerase II central domain bound with DNA and m-AMSA
Release date: Sept. 25, 2024
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8yo7
Q-score: 0.471
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8yo7
Q-score: 0.471
To Be Published
Sample:
- Dna (5'-d(p*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*a)-3') (15 kDa, DNA from DNA molecule)
- Phage t6 topoisomerase ii central domain bound with dna and m-amsa (Complex from Enterobacteria phage T6)
- N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide (393 Da, Ligand)
- Dna (5'-d(p*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*t)-3') (16 kDa, DNA from DNA molecule)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Water (18 Da, Ligand)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
structure of phage T4 topoisomerase II gp52 subunit WHD-open state
Release date: Sept. 25, 2024
Resolution: 6.12 Å
EM Method: Single-particle
Fitted PDBs: 8yo9
Q-score: 0.111
Resolution: 6.12 Å
EM Method: Single-particle
Fitted PDBs: 8yo9
Q-score: 0.111
To Be Published
Sample:
structure of phage T6 apo full-length topoisomerase II
Release date: Sept. 25, 2024
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 8yod
Q-score: 0.085
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 8yod
Q-score: 0.085
To Be Published
Sample:
- Phage t6 apo full-length topoisomerase ii (Complex from Enterobacteria phage T6)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
structure of phage T6 full-length topoisomerase II bound with DNA
Release date: Sept. 25, 2024
Resolution: 6.73 Å
EM Method: Single-particle
Fitted PDBs: 8yon
Q-score: 0.135
Resolution: 6.73 Å
EM Method: Single-particle
Fitted PDBs: 8yon
Q-score: 0.135
To Be Published
Sample:
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (16 kDa, DNA from DNA molecule)
- Phage t6 full-length topoisomerase ii bound with dna (Complex from Enterobacteria phage T6)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)