Engineered human dynein motor domain in microtubule-bound state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8fcy
Q-score: 0.461
Ton WD, Wang Y, Chai P, Beauchamp-Perez C, Flint NT, Lammers LG, Xiong H, Zhang K, Markus SM
Nat Struct Mol Biol (2023) 30 pp. 1365-1379 [ DOI: doi:10.1038/s41594-023-01010-x Pubmed: 37322240 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Engineered human dynein motor domain in microtubule-bound state (350 kDa, Complex from Homo sapiens)
- Cytoplasmic dynein 1 heavy chain 1,serine--trna ligase (357 kDa, Protein from Homo sapiens)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8fd6
Q-score: 0.519
Ton WD, Wang Y, Chai P, Beauchamp-Perez C, Flint NT, Lammers LG, Xiong H, Zhang K, Markus SM
Nat Struct Mol Biol (2023) 30 pp. 1365-1379 [ DOI: doi:10.1038/s41594-023-01010-x Pubmed: 37322240 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Engineered human dynein motor domain in microtubule-unbound state in the buffer containing atp-vi (350 kDa, Complex from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Cytoplasmic dynein 1 heavy chain 1,serine--trna ligase (357 kDa, Protein from Homo sapiens)
- Vanadate ion (114 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8fdt
Q-score: 0.426
Ton WD, Wang Y, Chai P, Beauchamp-Perez C, Flint NT, Lammers LG, Xiong H, Zhang K, Markus SM
Nat Struct Mol Biol (2023) 30 pp. 1365-1379 [ DOI: doi:10.1038/s41594-023-01010-x Pubmed: 37322240 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Platelet-activating factor acetylhydrolase ib subunit beta (66 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein 1 heavy chain 1,serine--trna ligase (357 kDa, Protein from Homo sapiens)
- Engineered human dynein motor domain in microtubule-unbound state with lis1 complex in the buffer containing atp-vi (490 kDa, Complex from Homo sapiens)
- Vanadate ion (114 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8fdu
Q-score: 0.431
Ton WD, Wang Y, Chai P, Beauchamp-Perez C, Flint NT, Lammers LG, Xiong H, Zhang K, Markus SM
Nat Struct Mol Biol (2023) 30 pp. 1365-1379 [ DOI: doi:10.1038/s41594-023-01010-x Pubmed: 37322240 ]
- Engineered human dynein motor domain in microtubule-unbound state with lis1 complex in the buffer containing atp-vi (490 kDa, Complex from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Cytoplasmic dynein 1 heavy chain 1,serine--trna ligase (357 kDa, Protein from Homo sapiens)
- Platelet-activating factor acetylhydrolase ib subunit beta,platelet-activating factor acetylhydrolase ib subunit beta,human lis1 protein with a snap tag (66 kDa, Protein from Homo sapiens)
SARS-CoV-2 spike protein in complex with three human neutralizing antibodies
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 7whz
Q-score: 0.487
Wang S, Sun H, Zhang Y, Yuan L, Wang Y, Zhang T, Wang S, Zhang J, Yu H, Xiong H, Tang Z, Liu L, Huang Y, Chen X, Li T, Ying D, Liu C, Chen Z, Yuan Q, Zhang J, Cheng T, Li S, Guan Y, Zheng Q, Zheng Z, Xia N
Cell Rep (2022) 39 pp. 110862-110862 [ DOI: doi:10.1016/j.celrep.2022.110862 Pubmed: 35594869 ]
- Xma04 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Xma01 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Xma09 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Ig c934_light_igkv1-5_igkj1 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with three human neutralizing antibodies (Complex from Severe acute respiratory syndrome coronavirus 2)
- Igl c4029_light_igkv1-39_igkj2 (11 kDa, Protein from Homo sapiens)
- Ig c1437_light_iglv1-40_iglj1 (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron variant spike in complex with three human neutralizing antibodies
Resolution: 3.82 Å
EM Method: Single-particle
Fitted PDBs: 7wi0
Q-score: 0.457
Wang S, Sun H, Zhang Y, Yuan L, Wang Y, Zhang T, Wang S, Zhang J, Yu H, Xiong H, Tang Z, Liu L, Huang Y, Chen X, Li T, Ying D, Liu C, Chen Z, Yuan Q, Zhang J, Cheng T, Li S, Guan Y, Zheng Q, Zheng Z, Xia N
Cell Rep (2022) 39 pp. 110862-110862 [ DOI: doi:10.1016/j.celrep.2022.110862 Pubmed: 35594869 ]
- Xma04 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Xma01 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron variant spike in complex with three human neutralizing antibodies (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xma09 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Ig c934_light_igkv1-5_igkj1 (11 kDa, Protein from Homo sapiens)
- Igl c4029_light_igkv1-39_igkj2 (11 kDa, Protein from Homo sapiens)
- Ig c1437_light_iglv1-40_iglj1 (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (22 kDa, Protein from Homo sapiens)