Structure of the type III-E CRISPR-Cas effector gRAMP
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7xso
Q-score: 0.553
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Gramp (Complex from Candidatus Scalindua brodae)
- Rna (35-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7xsp
Q-score: 0.554
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (35-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Gramp-target rna (Complex from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*g)-3') (12 kDa, RNA from Candidatus Scalindua brodae)
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 7xsq
Q-score: 0.496
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Rna (Complex)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Craspase (Complex from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein, chat domain protein (Complex from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
Structure of Craspase-target RNA
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7xsr
Q-score: 0.52
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Rna (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna 34-mer (Complex)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Craspase-target rna (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein, chat domain protein (Complex)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*g)-3') (12 kDa, RNA from Candidatus Scalindua brodae)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xss
Q-score: 0.465
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Rna (Complex)
- Chat domain protein (Complex from Candidatus Scalindua brodae)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*ap*cp*gp*ap*u)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Craspase-ctr complex (Complex from Candidatus Scalindua brodae)
- Rna 34-mer (Complex)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 7xt4
Q-score: 0.536
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Rna (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*up*ap*cp*cp*g)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Rna (34-mer) (Complex)
- Rna (34-mer) (17 kDa, RNA from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Ramp superfamily protein, chat domain protein (Complex)
- Craspase-ntr complex (Complex from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
Resolution: 7.3 Å
EM Method: Single-particle
Fitted PDBs: 7xxl
Q-score: 0.033
Ku Z, Xie X, Lin J, Gao P, Wu B, El Sahili A, Su H, Liu Y, Ye X, Tan EY, Li X, Fan X, Goh BC, Xiong W, Boyd H, Muruato AE, Deng H, Xia H, Zou J, Kalveram BK, Menachery VD, Zhang N, Lescar J, Shi PY, An Z
Nat Commun (2022) 13 pp. 5552-5552 [ DOI: doi:10.1038/s41467-022-33284-y Pubmed: 36138032 ]
- Rbd bound to fab14 (Complex)
- Receptor binding domain of wild-type spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab14 heavy chain (25 kDa, Protein from Homo sapiens)
- Fab14 (Complex from Homo sapiens)
- Fab14 light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Structure of the human voltage-gated sodium channel Nav1.4 in complex with beta1
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6agf
Q-score: 0.526
Pan X, Li Z, Zhou Q, Shen H, Wu K, Huang X, Chen J, Zhang J, Zhu X, Lei J, Xiong W, Gong H, Xiao B, Yan N
Science (2018) 362 [ Pubmed: 30190309 DOI: doi:10.1126/science.aau2486 ]
- (3beta,14beta,17beta,25r)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en (544 Da, Ligand)
- Sodium channel subunit beta-1 (24 kDa, Protein from Homo sapiens)
- Complex of human sodium channel protein type 4 subunit alpha and human sodium channel subunit beta-1 (200 kDa, Complex)
- Sodium channel protein type 4 subunit alpha (212 kDa, Protein from Homo sapiens)
- Human sodium channel protein type 4 subunit alpha (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human sodium channel subunit beta-1 (Complex from Homo sapiens)
- [(2~{r})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{z})-octadec-9-enoate (717 Da, Ligand)