Structure of the type III-E CRISPR-Cas effector gRAMP
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7xso
Q-score: 0.553
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Gramp (Complex from Candidatus Scalindua brodae)
- Rna (35-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7xsp
Q-score: 0.554
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*g)-3') (12 kDa, RNA from Candidatus Scalindua brodae)
- Rna (35-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Gramp-target rna (Complex from Candidatus Scalindua brodae)
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 7xsq
Q-score: 0.496
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Rna (Complex)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Craspase (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein, chat domain protein (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
Structure of Craspase-target RNA
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7xsr
Q-score: 0.52
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Ramp superfamily protein, chat domain protein (Complex)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*g)-3') (12 kDa, RNA from Candidatus Scalindua brodae)
- Craspase-target rna (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna 34-mer (Complex)
- Rna (Complex from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xss
Q-score: 0.465
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Rna (Complex)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Craspase-ctr complex (Complex from Candidatus Scalindua brodae)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*ap*cp*gp*ap*u)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Chat domain protein (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna 34-mer (Complex)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 7xt4
Q-score: 0.536
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Ramp superfamily protein, chat domain protein (Complex)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*up*ap*cp*cp*g)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Rna (34-mer) (17 kDa, RNA from Candidatus Scalindua brodae)
- Craspase-ntr complex (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (Complex from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Rna (34-mer) (Complex)
Resolution: 7.3 Å
EM Method: Single-particle
Fitted PDBs: 7xxl
Q-score: 0.033
Ku Z, Xie X, Lin J, Gao P, Wu B, El Sahili A, Su H, Liu Y, Ye X, Tan EY, Li X, Fan X, Goh BC, Xiong W, Boyd H, Muruato AE, Deng H, Xia H, Zou J, Kalveram BK, Menachery VD, Zhang N, Lescar J, Shi PY, An Z
Nat Commun (2022) 13 pp. 5552-5552 [ Pubmed: 36138032 DOI: doi:10.1038/s41467-022-33284-y ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Receptor binding domain of wild-type spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Rbd bound to fab14 (Complex)
- Fab14 (Complex from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab14 heavy chain (25 kDa, Protein from Homo sapiens)
- Fab14 light chain (22 kDa, Protein from Homo sapiens)
Structure of the human voltage-gated sodium channel Nav1.4 in complex with beta1
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6agf
Q-score: 0.526
Pan X, Li Z, Zhou Q, Shen H, Wu K, Huang X, Chen J, Zhang J, Zhu X, Lei J, Xiong W, Gong H, Xiao B, Yan N
Science (2018) 362 [ Pubmed: 30190309 DOI: doi:10.1126/science.aau2486 ]
- Human sodium channel subunit beta-1 (Complex from Homo sapiens)
- Human sodium channel protein type 4 subunit alpha (Complex from Homo sapiens)
- (3beta,14beta,17beta,25r)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en (544 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complex of human sodium channel protein type 4 subunit alpha and human sodium channel subunit beta-1 (200 kDa, Complex)
- [(2~{r})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{z})-octadec-9-enoate (717 Da, Ligand)
- Sodium channel subunit beta-1 (24 kDa, Protein from Homo sapiens)
- Sodium channel protein type 4 subunit alpha (212 kDa, Protein from Homo sapiens)