Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9j1w
Q-score: 0.543
Cryo-EM structure of BfUbb-ButCD complex
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 8ypt
Q-score: 0.577
Tong M, Xu J, Li W, Jiang K, Yang Y, Chen Z, Jiao X, Meng X, Wang M, Hong J, Long H, Liu SJ, Lim B, Gao X
Nat Commun (2024) 15 pp. 8794-8794 [ DOI: doi:10.1038/s41467-024-53149-w Pubmed: 39389974 ]
- Ubiquitin-like protein (8 kDa, Protein from Bacteroides fragilis)
- Butcd-bfubb complex (Complex from Bacteroides fragilis)
- Tonb-linked outer membrane protein (111 kDa, Protein from Bacteroides fragilis)
- Membrane protein (48 kDa, Protein from Bacteroides fragilis)
Cryo-EM structure of ACE2-B0AT1 complex with JX98
Xu J, Hu Z, Dai L, Yadav A, Jiang Y, Broer A, Gardiner MG, McLeod M, Yan R, Broer S
Nat Commun (2024) 15 pp. 7224-7224 [ DOI: doi:10.1038/s41467-024-51748-1 Pubmed: 39174516 ]
- Ace2-b0at1 complex with inhibitor jx98 (Complex from Homo sapiens)
- 2-(4-chloranyl-3,5-dimethyl-phenoxy)-~{n}-propan-2-yl-ethanamide (255 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sodium-dependent neutral amino acid transporter b(0)at1 (72 kDa, Protein from Homo sapiens)
- Angiotensin-converting enzyme 2 (94 kDa, Protein from Homo sapiens)
Cryo-EM structure of ACE2-B0AT1 complex with JX225
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8wbz
Q-score: 0.466
Xu J, Hu Z, Dai L, Yadav A, Jiang Y, Broer A, Gardiner MG, McLeod M, Yan R, Broer S
Nat Commun (2024) 15 pp. 7224-7224 [ DOI: doi:10.1038/s41467-024-51748-1 Pubmed: 39174516 ]
- Ace2-b0at1 complex with inhibitor jx225 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sodium-dependent neutral amino acid transporter b(0)at1 (72 kDa, Protein from Homo sapiens)
- 2-(4-bromanyl-3-methyl-phenoxy)-~{n}-propyl-ethanamide (286 Da, Ligand)
- Angiotensin-converting enzyme 2 (94 kDa, Protein from Homo sapiens)
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 8sy6
Q-score: 0.449
Oh J, Shan Z, Hoshika S, Xu J, Chong J, Benner SA, Lyumkis D, Wang D
Nat Commun (2023) 14 pp. 8219-8219 [ DOI: doi:10.1038/s41467-023-43735-9 Pubmed: 38086811 ]
- Template single stranded dna (8 kDa, DNA from synthetic construct)
- Rna oligomer (2 kDa, RNA from synthetic construct)
- E. coli rnap transcription elongation complex bound the unnatural db-utp base pair in the active site (500 kDa, Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Non-template single stranded dna (5 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- 2'-deoxyguanosine-5'-monophosphate (347 Da, Ligand)
SARS-CoV-2 Delta variant spike protein
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8hrj
Q-score: 0.156
SARS-CoV-2 Delta S-RBD-ACE2 complex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8hrk
Q-score: 0.401
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8hrn
Q-score: 0.291
Zheng L, Xu J, Wang W, Gao X, Zhao C, Guo W, Sun L, Cheng H, Meng F, Chen B, Sun W, Jia X, Zhou X, Wu K, Liu Z, Ding F, Liu N, Wang HW, Peng H
Nat Commun (2024) 15 pp. 7300-7300 [ DOI: doi:10.1038/s41467-024-51696-w Pubmed: 39181869 ]
- Ace2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8hru
Q-score: 0.273
Zheng L, Xu J, Wang W, Gao X, Zhao C, Guo W, Sun L, Cheng H, Meng F, Chen B, Sun W, Jia X, Zhou X, Wu K, Liu Z, Ding F, Liu N, Wang HW, Peng H
Nat Commun (2024) 15 pp. 7300-7300 [ DOI: doi:10.1038/s41467-024-51696-w Pubmed: 39181869 ]
- Ace2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Structure of PfENT1(Y190A) in complex with nanobody 19
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 7wn0
Q-score: 0.489
Wang C, Yu L, Zhang J, Zhou Y, Sun B, Xiao Q, Zhang M, Liu H, Li J, Li J, Luo Y, Xu J, Lian Z, Lin J, Wang X, Zhang P, Guo L, Ren R, Deng D
Nat Commun (2023) 14 pp. 1727-1727 [ Pubmed: 36977719 DOI: doi:10.1038/s41467-023-37411-1 ]
- Nanobody19 (13 kDa, Protein from Vicugna pacos)
- Pfent1(y190a) in complex with nanobody 19 (Complex from Plasmodium falciparum)
- Pfent1 (Complex from Vicugna pacos)
- Nanobody 19 (Complex)
- Equilibrative nucleoside/nucleobase transporter (47 kDa, Protein from Plasmodium falciparum)