Cryo-EM structure of streptavidin
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 8hrm
Q-score: 0.518
Zheng L, Xu J, Wang W, Gao X, Zhao C, Guo W, Sun L, Cheng H, Meng F, Chen B, Sun W, Jia X, Zhou X, Wu K, Liu Z, Ding F, Liu N, Wang HW, Peng H
Nat Commun (2024) 15 pp. 7300-7300 [ DOI: doi:10.1038/s41467-024-51696-w Pubmed: 39181869 ]
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
- Water (18 Da, Ligand)
- Streptavidin (Complex from Streptomyces avidinii)
Yeast Dmc1 presynaptic complex
Resolution: 3.21 Å
EM Method: Helical reconstruction
Fitted PDBs: 7ej6
Q-score: 0.524
Xu J, Zhao L, Peng S, Chu H, Liang R, Tian M, Connell PP, Li G, Chen C, Wang HW
Nucleic Acids Res (2021) 49 pp. 13135-13149 [ DOI: doi:10.1093/nar/gkab1141 Pubmed: 34871438 ]
- Hlj1_g0016300.mrna.1.cds.1 (36 kDa, Protein from Saccharomyces cerevisiae)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Yeast dmc1 presynaptic complex (Complex from Saccharomyces cerevisiae)
Yeast Dmc1 post-synaptic complex
Resolution: 3.41 Å
EM Method: Helical reconstruction
Fitted PDBs: 7ej7
Q-score: 0.505
Xu J, Zhao L, Peng S, Chu H, Liang R, Tian M, Connell PP, Li G, Chen C, Wang HW
Nucleic Acids Res (2021) 49 pp. 13135-13149 [ DOI: doi:10.1093/nar/gkab1141 Pubmed: 34871438 ]
- Hlj1_g0016300.mrna.1.cds.1 (36 kDa, Protein from Saccharomyces cerevisiae)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from Saccharomyces cerevisiae)
- Yeast dmc1 post-synaptic complex (Complex from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (2 kDa, DNA from Saccharomyces cerevisiae)
human RAD51 presynaptic complex
Resolution: 2.97 Å
EM Method: Helical reconstruction
Fitted PDBs: 7ejc
Q-score: 0.554
Xu J, Zhao L, Peng S, Chu H, Liang R, Tian M, Connell PP, Li G, Chen C, Wang HW
Nucleic Acids Res (2021) 49 pp. 13135-13149 [ DOI: doi:10.1093/nar/gkab1141 Pubmed: 34871438 ]
- Dna (Complex from Homo sapiens)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from Homo sapiens)
- Dna repair protein rad51 homolog 1 (37 kDa, Protein from Homo sapiens)
- Human rad51 (Complex from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Human rad51 presynaptic complex (Complex)
- 4-bromanyl-n-(4-bromophenyl)-3-[(phenylmethyl)sulfamoyl]benzamide (524 Da, Ligand)
human RAD51 post-synaptic complex
Resolution: 3.98 Å
EM Method: Helical reconstruction
Fitted PDBs: 7eje
Q-score: 0.382
Xu J, Zhao L, Peng S, Chu H, Liang R, Tian M, Connell PP, Li G, Chen C, Wang HW
Nucleic Acids Res (2021) 49 pp. 13135-13149 [ DOI: doi:10.1093/nar/gkab1141 Pubmed: 34871438 ]
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from Homo sapiens)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (2 kDa, DNA from Homo sapiens)
- Dna repair protein rad51 homolog 1 (37 kDa, Protein from Homo sapiens)
- Dna (Complex)
- Human rad51 post-synaptic complex (Complex from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Human rad51 (Complex)
cryo-EM structure of alpha2BAR-GoA complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6k41
Q-score: 0.556
Yuan D, Liu Z, Kaindl J, Maeda S, Zhao J, Sun X, Xu J, Gmeiner P, Wang HW, Kobilka BK
Nat Chem Biol (2020) 16 pp. 507-512 [ DOI: doi:10.1038/s41589-020-0492-2 Pubmed: 32152538 ]
- Guanine nucleotide-binding protein g(o) subunit alpha (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Mus musculus)
- Scfv (32 kDa, Protein from Mus musculus)
- 4-[(1~{s})-1-(2,3-dimethylphenyl)ethyl]-1~{h}-imidazole (200 Da, Ligand)
- Alpha2bar-goa complex (150 kDa, Complex from Spodoptera)
- Alpha-2a adrenergic receptor,endolysin,alpha-2b adrenergic receptor,alpha-2b adrenergic receptor (58 kDa, Protein from Homo sapiens)
cryo-EM structure of alpha2BAR-Gi1 complex
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6k42
Q-score: 0.299
Yuan D, Liu Z, Kaindl J, Maeda S, Zhao J, Sun X, Xu J, Gmeiner P, Wang HW, Kobilka BK
Nat Chem Biol (2020) 16 pp. 507-512 [ DOI: doi:10.1038/s41589-020-0492-2 Pubmed: 32152538 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Mus musculus)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Scfv (32 kDa, Protein from Mus musculus)
- 4-[(1~{s})-1-(2,3-dimethylphenyl)ethyl]-1~{h}-imidazole (200 Da, Ligand)
- Alpha2bar-gi1 complex (150 kDa, Complex from Spodoptera)
- Alpha-2a adrenergic receptor,endolysin,alpha-2b adrenergic receptor,alpha-2b adrenergic receptor (58 kDa, Protein from Homo sapiens)