Structure of A2BR bound to synthetic agonists BAY 60-6583
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8hdo
Q-score: 0.497
Cai H, Xu Y, Guo S, He X, Sun J, Li X, Li C, Yin W, Cheng X, Jiang H, Xu HE, Xie X, Jiang Y
Cell Discov (2022) 8 pp. 140-140 [ DOI: doi:10.1038/s41421-022-00503-1 Pubmed: 36575181 ]
- A2br-g protein-bay 60-6583 complex (160 kDa, Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Chimeric minigs (29 kDa, Protein from Homo sapiens)
- Adenosine a2b receptor (36 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Nanobody 35 (13 kDa, Protein from Camelus bactrianus)
- Cholesterol (386 Da, Ligand)
- 2-[6-azanyl-3,5-dicyano-4-[4-(cyclopropylmethoxy)phenyl]pyridin-2-yl]sulfanylethanamide (379 Da, Ligand)
Structure of A2BR bound to endogenous agonists adenosine
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8hdp
Q-score: 0.428
Cai H, Xu Y, Guo S, He X, Sun J, Li X, Li C, Yin W, Cheng X, Jiang H, Xu HE, Xie X, Jiang Y
Cell Discov (2022) 8 pp. 140-140 [ Pubmed: 36575181 DOI: doi:10.1038/s41421-022-00503-1 ]
- Cholesterol (386 Da, Ligand)
- Nanobody 35 (13 kDa, Protein from Camelus bactrianus)
- A2br-g protein-adenosine complex (160 kDa, Complex from Homo sapiens)
- Chimeric minigs (29 kDa, Protein from Homo sapiens)
- Adenosine a2b receptor (36 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Adenosine (267 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron BA.1 Variant Spike Trimer with two mouse ACE2 Bound
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7xo4
Q-score: 0.212
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ Pubmed: 35641567 DOI: doi:10.1038/s41422-022-00672-4 ]
- Sars-cov-2 omicron ba.1 variant spike trimer (Complex from Mus musculus)
- Zinc ion (65 Da, Ligand)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- Mouse ace2 (Complex)
- Sars-cov-2 omicron ba.1 variant spike trimer with two mouse ace2 bound (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 Omicron BA.1 Variant Spike Trimer with one mouse ACE2 Bound
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7xo5
Q-score: 0.315
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ Pubmed: 35641567 DOI: doi:10.1038/s41422-022-00672-4 ]
- Sars-cov-2 omicron ba.1 variant spike trimer (Complex from Mus musculus)
- Zinc ion (65 Da, Ligand)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Mouse ace2 (Complex)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- Sars-cov-2 omicron ba.1 variant spike trimer with one mouse ace2 bound (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 Omicron BA.1 Variant RBD with mouse ACE2 Bound
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7xo6
Q-score: 0.472
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Sars-cov-2 omicron ba.1 variant rbd (Complex)
- Mouse ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Sars-cov-2 omicron ba.1 variant rbd with mouse ace2 bound (Complex from Mus musculus)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with two human ACE2 Bound
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 7xo7
Q-score: 0.219
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Chloride ion (35 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.2 variant spike trimer with two human ace2 bound (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.2 variant spike trimer (Complex)
- Human angiotensin-converting enzyme 2 (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with three human ACE2 Bound
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 7xo8
Q-score: 0.154
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Chloride ion (35 Da, Ligand)
- Human ace2 (Complex from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.2 variant spike trimer with three human ace2 bound (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.2 variant spike trimer (Complex)
- Zinc ion (65 Da, Ligand)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron BA.2 Variant RBD complexed with human ACE2
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xo9
Q-score: 0.445
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ Pubmed: 35641567 DOI: doi:10.1038/s41422-022-00672-4 ]
- Human ace2 (Complex from Homo sapiens)
- Sars-cov-2 omicron ba.2 variant rbd (Complex)
- Zinc ion (65 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.2 variant rbd complexed with human ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with one mouse ACE2 Bound
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xoa
Q-score: 0.253
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.2 variant spike trimer with one mouse ace2 bound (Complex from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- Mouse angiotensin-converting enzyme 2 (Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.2 variant spike trimer (Complex)
- Zinc ion (65 Da, Ligand)
SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with two mouse ACE2 Bound
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7xob
Q-score: 0.23
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Mouse angiotensin-converting enzyme 2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.2 variant spike trimer with two mouse ace2 bound (Complex from Mus musculus)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.2 variant spike trimer (Complex)
- Zinc ion (65 Da, Ligand)