SARS-CoV-2 Omicron BA.1 Variant Spike Trimer with two mouse ACE2 Bound
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7xo4
Q-score: 0.212
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Sars-cov-2 omicron ba.1 variant spike trimer with two mouse ace2 bound (Complex from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.1 variant spike trimer (Complex from Mus musculus)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Mouse ace2 (Complex)
SARS-CoV-2 Omicron BA.1 Variant Spike Trimer with one mouse ACE2 Bound
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7xo5
Q-score: 0.315
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.1 variant spike trimer (Complex from Mus musculus)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Mouse ace2 (Complex)
- Sars-cov-2 omicron ba.1 variant spike trimer with one mouse ace2 bound (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron BA.1 Variant RBD with mouse ACE2 Bound
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7xo6
Q-score: 0.472
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- Sars-cov-2 omicron ba.1 variant rbd with mouse ace2 bound (Complex from Mus musculus)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.1 variant rbd (Complex)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Mouse ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with two human ACE2 Bound
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 7xo7
Q-score: 0.219
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.2 variant spike trimer with two human ace2 bound (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.2 variant spike trimer (Complex)
- Chloride ion (35 Da, Ligand)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Human angiotensin-converting enzyme 2 (Complex from Homo sapiens)
SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with three human ACE2 Bound
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 7xo8
Q-score: 0.154
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Zinc ion (65 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Human ace2 (Complex from Homo sapiens)
- Sars-cov-2 omicron ba.2 variant spike trimer with three human ace2 bound (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron ba.2 variant spike trimer (Complex)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron BA.2 Variant RBD complexed with human ACE2
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xo9
Q-score: 0.445
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Sars-cov-2 omicron ba.2 variant rbd (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human ace2 (Complex from Homo sapiens)
- Chloride ion (35 Da, Ligand)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron ba.2 variant rbd complexed with human ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with one mouse ACE2 Bound
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xoa
Q-score: 0.253
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Mouse angiotensin-converting enzyme 2 (Complex from Mus musculus)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.2 variant spike trimer (Complex)
- Sars-cov-2 omicron ba.2 variant spike trimer with one mouse ace2 bound (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with two mouse ACE2 Bound
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7xob
Q-score: 0.23
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.2 variant spike trimer (Complex)
- Sars-cov-2 omicron ba.2 variant spike trimer with two mouse ace2 bound (Complex from Mus musculus)
- Mouse angiotensin-converting enzyme 2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron BA.2 Variant RBD complexed with mouse ACE2
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xoc
Q-score: 0.458
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- Mouse angiotensin-converting enzyme 2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.2 variant rbd (Complex)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.2 variant rbd complexed with mouse ace2 (Complex from Mus musculus)
- Zinc ion (65 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron BA.2 Variant Spike Trimer with three JMB2002 Fab Bound
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 7xod
Q-score: 0.277
Xu Y, Wu C, Cao X, Gu C, Liu H, Jiang M, Wang X, Yuan Q, Wu K, Liu J, Wang D, He X, Wang X, Deng SJ, Xu HE, Yin W
Cell Res (2022) 32 pp. 609-620 [ DOI: doi:10.1038/s41422-022-00672-4 Pubmed: 35641567 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanobody (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.2 variant spike trimer (Complex)
- Heavy chain of jmb2002 fab (24 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron ba.2 variant spike trimer with three jmb2002 fab bound (Complex from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Jmb2002 fab (Complex from Lama glama)
- Light chain of jmb2002 fab (23 kDa, Protein from Homo sapiens)
- Nanobody (13 kDa, Protein from Lama glama)