Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7f0d
Q-score: 0.473
Zhang W, Li Z, Sun Y, Cui P, Liang J, Xing Q, Wu J, Xu Y, Zhang W, Zhang Y, He L, Gao N
Emerg Microbes Infect (2022) 11 pp. 293-305 [ Pubmed: 34935599 DOI: doi:10.1080/22221751.2021.2022439 ]
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal subunit (Complex from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l4 (23 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l33 (6 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l27 (8 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- Mycobacterium tuberculosis ribosome 50s subunit (Complex)
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 5s ribosomal rna (37 kDa, RNA from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l23 (10 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- Water (18 Da, Ligand)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l22 (20 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- Clarithromycin (747 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l19 (13 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 23s rrna (1 MDa, RNA from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l17 (19 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l9 (16 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium tuberculosis H37Ra)
Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with C48/80, state2
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7vdh
Q-score: 0.53
Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, Li Z, Zhou J, Yu X, Gao N, Sun JP
Nature (2021) 600 pp. 164-169 [ DOI: doi:10.1038/s41586-021-04077-y Pubmed: 34789875 ]
- Cholesterol (386 Da, Ligand)
- Mas-related g-protein coupled receptor member x2 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Cryo-em structure of pseudoallergen receptor mrgprx2 complex with c48/80, state2 (Complex from Homo sapiens)
- Scfv (30 kDa, Protein from Homo sapiens)
- 2-[4-methoxy-3-[[2-methoxy-3-[[2-methoxy-5-[2-(methylamino)ethyl]phenyl]methyl]-5-[2-(methylamino)ethyl]phenyl]methyl]phenyl]-~{n}-methyl-ethanamine (519 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with circular cortistatin-14
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 7vdl
Q-score: 0.5
Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, Li Z, Zhou J, Yu X, Gao N, Sun JP
Nature (2021) 600 pp. 164-169 [ DOI: doi:10.1038/s41586-021-04077-y Pubmed: 34789875 ]
- Cholesterol (386 Da, Ligand)
- Mas-related g-protein coupled receptor member x2 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Scfv (30 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- The pseudoallergen receptor mrgprx2 complex with circular cortistatin-14 (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Circular cortistatin-14 (1 kDa, Protein from Homo sapiens)
Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with substance P
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 7vdm
Q-score: 0.531
Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, Li Z, Zhou J, Yu X, Gao N, Sun JP
Nature (2021) 600 pp. 164-169 [ DOI: doi:10.1038/s41586-021-04077-y Pubmed: 34789875 ]
- Mas-related g-protein coupled receptor member x2 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Peptide from protachykinin-1 (1 kDa, Protein from Homo sapiens)
- The pseudoallergen receptor mrgprx2 complex with substance p (Complex from Homo sapiens)
- Scfv (30 kDa, Protein from Homo sapiens)
Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with PAMP-12. state1
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7vuy
Q-score: 0.509
Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, Li Z, Zhou J, Yu X, Gao N, Sun JP
Nature (2021) 600 pp. 164-169 [ DOI: doi:10.1038/s41586-021-04077-y Pubmed: 34789875 ]
- Mas-related g-protein coupled receptor member x2 (37 kDa, Protein from Homo sapiens)
- Scfv (30 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Cryo-em structure of pseudoallergen receptor mrgprx2 complex with pamp-12, state1 (Complex from Homo sapiens)
Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with PAMP-12, state2
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7vuz
Q-score: 0.459
Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, Li Z, Zhou J, Yu X, Gao N, Sun JP
Nature (2021) 600 pp. 164-169 [ DOI: doi:10.1038/s41586-021-04077-y Pubmed: 34789875 ]
- Mas-related g-protein coupled receptor member x2 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Cryo-em structure of pseudoallergen receptor mrgprx2 complex with pamp-12, state2 (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Scfv (30 kDa, Protein from Homo sapiens)
Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with PAMP-12, local
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7vv0
Q-score: 0.469
Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, Li Z, Zhou J, Yu X, Gao N, Sun JP
Nature (2021) 600 pp. 164-169 [ DOI: doi:10.1038/s41586-021-04077-y Pubmed: 34789875 ]
- Mas-related g-protein coupled receptor member x2 (37 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Cryo-em structure of pseudoallergen receptor mrgprx2 complex with pamp-12, local (Complex from Homo sapiens)
- Peptide from pro-adrenomedullin (1 kDa, Protein from Homo sapiens)
Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with linear cortistatin-14
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7vv3
Q-score: 0.531
Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, Li Z, Zhou J, Yu X, Gao N, Sun JP
Nature (2021) 600 pp. 164-169 [ DOI: doi:10.1038/s41586-021-04077-y Pubmed: 34789875 ]
- Mas-related g-protein coupled receptor member x2 (37 kDa, Protein from Homo sapiens)
- Cryo-em structure of pseudoallergen receptor mrgprx2 complex with linear cortistatin-14 (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Scfv (30 kDa, Protein from Homo sapiens)
Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with linear cortistatin-14, local
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7vv4
Q-score: 0.471
Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, Li Z, Zhou J, Yu X, Gao N, Sun JP
Nature (2021) 600 pp. 164-169 [ DOI: doi:10.1038/s41586-021-04077-y Pubmed: 34789875 ]
- Mas-related g-protein coupled receptor member x2 (37 kDa, Protein from Homo sapiens)
- Cryo-em structure of pseudoallergen receptor mrgprx2 complex with linear cortistatin-14, local (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Circular cortistatin-14 (1 kDa, Protein from Homo sapiens)
Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with C48/80, state1
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7vv5
Q-score: 0.575
Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, Li Z, Zhou J, Yu X, Gao N, Sun JP
Nature (2021) 600 pp. 164-169 [ DOI: doi:10.1038/s41586-021-04077-y Pubmed: 34789875 ]
- Mas-related g-protein coupled receptor member x2 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Cryo-em structure of pseudoallergen receptor mrgprx2 complex with c48/80, state1 (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- 2-[4-methoxy-3-[[2-methoxy-3-[[2-methoxy-5-[2-(methylamino)ethyl]phenyl]methyl]-5-[2-(methylamino)ethyl]phenyl]methyl]phenyl]-~{n}-methyl-ethanamine (519 Da, Ligand)
- Scfv (30 kDa, Protein from Homo sapiens)