cryo-EM structure of human EMC
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8j0n
Q-score: 0.031
Li M, Zhang C, Xu Y, Li S, Huang C, Wu J, Lei M
Aging (Albany NY) (2024) 16 pp. 5501-5525 [ Pubmed: 38517390 DOI: doi:10.18632/aging.205660 ]
- Emc (Complex from Homo sapiens)
- Er membrane protein complex subunit 10 (21 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 1 (111 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 4 (20 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 8 (23 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 6 (12 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 5 (14 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 7 (26 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 3 (29 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 2 (34 kDa, Protein from Homo sapiens)
cryo-EM structure of human EMC and VDAC
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8j0o
Q-score: 0.017
Li M, Zhang C, Xu Y, Li S, Huang C, Wu J, Lei M
Aging (Albany NY) (2024) 16 pp. 5501-5525 [ DOI: doi:10.18632/aging.205660 Pubmed: 38517390 ]
- Er membrane protein complex subunit 10 (21 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 3 (29 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 6 (12 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 1 (111 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 8 (23 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 4 (20 kDa, Protein from Homo sapiens)
- Emc_vdac (Complex from Homo sapiens)
- Er membrane protein complex subunit 5 (14 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 7 (26 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 2 (34 kDa, Protein from Homo sapiens)
- Voltage-dependent anion-selective channel protein 1 (30 kDa, Protein from Homo sapiens)
cryo-EM structure of human RNA polymerase III in elongating state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7d58
Q-score: 0.014
Wang Q, Li S, Wan F, Xu Y, Wu Z, Cao M, Lan P, Lei M, Wu J
Nat Struct Mol Biol (2021) 28 pp. 220-227 [ Pubmed: 33558766 DOI: doi:10.1038/s41594-021-00557-x ]
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc3 (60 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc1 (155 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc5 (80 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc4 (44 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc7 (25 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc9 (16 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc2 (127 kDa, Protein from Homo sapiens)
- Template dna (12 kDa, DNA from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
- Rna (6 kDa, RNA from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc6 (35 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Human pol3 ec (Complex from Homo sapiens)
- Non-template dna (12 kDa, DNA from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc8 (22 kDa, Protein from Homo sapiens)
cryo-EM structure of human RNA polymerase III in apo state
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7d59
Q-score: 0.391
Wang Q, Li S, Wan F, Xu Y, Wu Z, Cao M, Lan P, Lei M, Wu J
Nat Struct Mol Biol (2021) 28 pp. 220-227 [ DOI: doi:10.1038/s41594-021-00557-x Pubmed: 33558766 ]
- Dna-directed rna polymerase iii subunit rpc9 (16 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc6 (35 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc3 (60 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc2 (127 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc7 (25 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc5 (80 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc4 (44 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc1 (155 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc8 (22 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Rna pol3 apo (Complex from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
Cryo-EM structure of a class A GPCR
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6lfm
Q-score: 0.461
Liu K, Wu L, Yuan S, Wu M, Xu Y, Sun Q, Li S, Zhao S, Hua T, Liu ZJ
Nature (2020) 585 pp. 135-140 [ Pubmed: 32610344 DOI: doi:10.1038/s41586-020-2492-5 ]
- Cholesterol (386 Da, Ligand)
- Interleukin-8 (8 kDa, Protein from Homo sapiens)
- Scfv16 (27 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Ternary complex of chemokine, gpcr and g protein (150 kDa, Complex from Homo sapiens)
- C-x-c chemokine receptor type 2 (40 kDa, Protein from Homo sapiens)
Cryo-EM structure of a class A GPCR monomer
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6lfo
Q-score: 0.441
Liu K, Wu L, Yuan S, Wu M, Xu Y, Sun Q, Li S, Zhao S, Hua T, Liu ZJ
Nature (2020) 585 pp. 135-140 [ DOI: doi:10.1038/s41586-020-2492-5 Pubmed: 32610344 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Interleukin-8 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- C-x-c chemokine receptor type 2 (40 kDa, Protein from Homo sapiens)
- Ternary complex of chemokine-monomer, gpcr and g protein (150 kDa, Complex from Homo sapiens)
- Scfv16 (27 kDa, Protein from Homo sapiens)
Subparticle refinement of human papillomavirus type 16 pesudovirus in complex with H16.001 Fab
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 7cn2
Q-score: 0.423
Huang W, He M, Ning T, Nie J, Zhang F, Zheng Q, Zhang R, Xu Y, Gu Y, Li S, Wang Y
NPJ Vaccines (2020) 5 pp. 89-89 [ Pubmed: 33042588 DOI: doi:10.1038/s41541-020-00236-w ]
- The heavy chain variable region of h16.001 fab fragment (13 kDa, Protein from Oryctolagus cuniculus)
- Major capsid protein l1 (56 kDa, Protein from Human papillomavirus type 16)
- Human papillomavirus type 16 pesudovirus in complex with h16.001 fab (Complex from Human papillomavirus type 16)
- The light chain variable region of h16.001 fab fragment (11 kDa, Protein from Oryctolagus cuniculus)
Structure of shut state rabbit ryanodine receptor 1 activated by calcium ion
Core region of shut state rabbit ryanodine receptor 1 activated by calcium ion
Wei R, Wang X, Zhang Y, Mukherjee S, Zhang L, Chen Q, Huang X, Jing S, Liu C, Li S, Wang G, Xu Y, Zhu S, Williams AJ, Sun F, Yin CC
Cell Res (2016) 26 pp. 977-994 [ Pubmed: 27573175 DOI: doi:10.1038/cr.2016.99 ]
- Rabbit ryanodine receptor 1 (Protein from Oryctolagus cuniculus)
- Ryanodine receptor 1 (2 MDa, Complex from Oryctolagus cuniculus)
Structure of open state rabbit ryanodine receptor 1 activated by calcium ion
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 5j8v
Q-score: 0.347
Wei R, Wang X, Zhang Y, Mukherjee S, Zhang L, Chen Q, Huang X, Jing S, Liu C, Li S, Wang G, Xu Y, Zhu S, Williams AJ, Sun F, Yin CC
Cell Res (2016) 26 pp. 977-994 [ Pubmed: 27573175 DOI: doi:10.1038/cr.2016.99 ]
- Ryanodine receptor (2 MDa, Complex from Oryctolagus cuniculus)
- Ryanodine receptor (Protein from Rabbit)