Cryo-EM structure of the dystrophin glycoprotein complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8yt8
Q-score: 0.412
Wan L, Ge X, Xu Q, Huang G, Yang T, Campbell KP, Yan Z, Wu J
Nature (2025) 637 pp. 1252-1260 [ Pubmed: 39663450 DOI: doi:10.1038/s41586-024-08310-2 ]
- Unknown segment (559 Da, Protein from Mus musculus)
- Gamma-sarcoglycan (28 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dystrobrevin alpha (23 kDa, Protein from Mus musculus)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Beta-dystroglycan (31 kDa, Protein from Mus musculus)
- Calcium ion (40 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dystrophin glycoprotein complex, dgc (Complex from Mus musculus)
- Delta-sarcoglycan (29 kDa, Protein from Mus musculus)
- Beta-sarcoglycan (28 kDa, Protein from Mus musculus)
- Cholesterol (386 Da, Ligand)
- Sarcospan (19 kDa, Protein from Mus musculus)
- Alpha-sarcoglycan (32 kDa, Protein from Mus musculus)
- Dystrophin (38 kDa, Protein from Mus musculus)
Cryo-EM structure of the dystrophin glycoprotein complex
Wan L, Ge X, Xu Q, Huang G, Yang T, Campbell KP, Yan Z, Wu J
Nature (2025) 637 pp. 1252-1260 [ Pubmed: 39663450 DOI: doi:10.1038/s41586-024-08310-2 ]
Cryo-EM Structure of the Arabidopsis thaliana TIC Complex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8z9y
Q-score: 0.531
Liang K, Jin Z, Zhan X, Li Y, Xu Q, Xie Y, Yang Y, Wang S, Wu J, Yan Z
Cell (2024) 187 pp. 5651-5664.e18 [ DOI: doi:10.1016/j.cell.2024.08.003 Pubmed: 39197452 ]
- Arabidopsis thaliana tic complex (Complex from Arabidopsis thaliana)
- Protein tic 100 (100 kDa, Protein from Arabidopsis thaliana)
- Protein tic 20-i, chloroplastic (31 kDa, Protein from Arabidopsis thaliana)
- Actin t1-like protein (12 kDa, Protein from Arabidopsis thaliana)
- Protein tic 56, chloroplastic (61 kDa, Protein from Arabidopsis thaliana)
- Protein tic 214 (214 kDa, Protein from Arabidopsis thaliana)
- Nucleusenvelope protein (30 kDa, Protein from Arabidopsis thaliana)
The composite EM map of the Ycf2-FtsHi motor complex from Arabidopsis in ATP-bound state
Liang K, Jin Z, Zhan X, Li Y, Xu Q, Xie Y, Yang Y, Wang S, Wu J, Yan Z
Cell (2024) 187 pp. 5651- [ DOI: doi:10.1016/j.cell.2024.08.003 Pubmed: 39197452 ]
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Aspartyl/glutamyl-trna (asn/gln) amidotransferase subunit b (9 kDa, Protein from Arabidopsis thaliana)
- The ycf2-ftshi motor complex from arabidopsis (Complex from Arabidopsis thaliana)
- Attam46 (45 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 2, chloroplastic (100 kDa, Protein from Arabidopsis thaliana)
- Atp-dependent zinc metalloprotease ftsh 12, chloroplastic (115 kDa, Protein from Arabidopsis thaliana)
- Magnesium ion (24 Da, Ligand)
- Embryo defective 2737 (37 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 5, chloroplastic (152 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 4, chloroplastic (96 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Zinc ion (65 Da, Ligand)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Protein ycf2 (269 kDa, Protein from Arabidopsis thaliana)
- Unk (3 kDa, Protein from Arabidopsis thaliana)
- Malate dehydrogenase, chloroplastic (42 kDa, Protein from Arabidopsis thaliana)
- 1,2-dilauroyl-sn-glycero-3-phosphate (535 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- At4g28210 (38 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic (105 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of the Ycf2-FtsHi motor complex from Arabidopsis in Apo state
Liang K, Jin Z, Zhan X, Li Y, Xu Q, Xie Y, Yang Y, Wang S, Wu J, Yan Z
Cell (2024) 187 pp. 5651- [ DOI: doi:10.1016/j.cell.2024.08.003 Pubmed: 39197452 ]
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Aspartyl/glutamyl-trna (asn/gln) amidotransferase subunit b (9 kDa, Protein from Arabidopsis thaliana)
- The ycf2-ftshi motor complex from arabidopsis (Complex from Arabidopsis thaliana)
- Attam46 (45 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 2, chloroplastic (100 kDa, Protein from Arabidopsis thaliana)
- Atp-dependent zinc metalloprotease ftsh 12, chloroplastic (115 kDa, Protein from Arabidopsis thaliana)
- Embryo defective 2737 (37 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 5, chloroplastic (152 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 4, chloroplastic (96 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Zinc ion (65 Da, Ligand)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Protein ycf2 (269 kDa, Protein from Arabidopsis thaliana)
- Unk (3 kDa, Protein from Arabidopsis thaliana)
- Malate dehydrogenase, chloroplastic (42 kDa, Protein from Arabidopsis thaliana)
- 1,2-dilauroyl-sn-glycero-3-phosphate (535 Da, Ligand)
- At4g28210 (38 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic (105 kDa, Protein from Arabidopsis thaliana)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8xqw
Q-score: 0.502
Liang K, Zhan X, Li Y, Yang Y, Xie Y, Jin Z, Xu X, Zhang W, Lu Y, Zhang S, Zou Y, Feng S, Wu J, Yan Z
Cell (2024) 187 pp. 5638-5650.e18 [ Pubmed: 39197449 DOI: doi:10.1016/j.cell.2024.08.002 ]
- Ctap1 (107 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-sitosterol (416 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Crtam29 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Arhl (51 kDa, Protein from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Crtam34 (34 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Ctap6 (109 kDa, Protein from Chlamydomonas reinhardtii)
- Dnaj (50 kDa, Protein from Chlamydomonas reinhardtii)
- The ycf2-ftshi motor complex from chlamydomonas (Complex from Chlamydomonas reinhardtii)
- Crtam15 (15 kDa, Protein from Chlamydomonas reinhardtii)
- Unk (7 kDa, Protein from Chlamydomonas reinhardtii)
- Fadl (70 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam31 (31 kDa, Protein from Chlamydomonas reinhardtii)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Crtam35 (34 kDa, Protein from Chlamydomonas reinhardtii)
- Zinc ion (65 Da, Ligand)
- Crtam49 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Acp (12 kDa, Protein from Chlamydomonas reinhardtii)
- Unk (13 kDa, Protein from Chlamydomonas reinhardtii)
- Pcya (61 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Tic22 (40 kDa, Protein from Chlamydomonas reinhardtii)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Fhl1 (128 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam39 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Diacyl glycerol (625 Da, Ligand)
- Ycf2 (342 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl3 (120 kDa, Protein from Chlamydomonas reinhardtii)
- Ctap7 (71 kDa, Protein from Chlamydomonas reinhardtii)
Cryo-EM structure of the Ycf2-FtsHi motor complex from chlamydomonas reinhardtii in apo state
Liang K, Zhan X, Li Y, Yang Y, Xie Y, Jin Z, Xu X, Zhang W, Lu Y, Zhang S, Zou Y, Feng S, Wu J, Yan Z
Cell (2024) 187 pp. 5638-5650.e18 [ Pubmed: 39197449 DOI: doi:10.1016/j.cell.2024.08.002 ]
- Ctap1 (107 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-sitosterol (416 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Crtam29 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Arhl (51 kDa, Protein from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Crtam34 (34 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Ctap6 (109 kDa, Protein from Chlamydomonas reinhardtii)
- Dnaj (50 kDa, Protein from Chlamydomonas reinhardtii)
- The ycf2-ftshi motor complex from chlamydomonas (Complex from Chlamydomonas reinhardtii)
- Crtam15 (15 kDa, Protein from Chlamydomonas reinhardtii)
- Unk (7 kDa, Protein from Chlamydomonas reinhardtii)
- Fadl (70 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam31 (31 kDa, Protein from Chlamydomonas reinhardtii)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Crtam35 (34 kDa, Protein from Chlamydomonas reinhardtii)
- Zinc ion (65 Da, Ligand)
- Crtam49 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Acp (12 kDa, Protein from Chlamydomonas reinhardtii)
- Unk (13 kDa, Protein from Chlamydomonas reinhardtii)
- Pcya (61 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Tic22 (40 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl1 (128 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam39 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Diacyl glycerol (625 Da, Ligand)
- Ycf2 (342 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl3 (120 kDa, Protein from Chlamydomonas reinhardtii)
- Ctap7 (71 kDa, Protein from Chlamydomonas reinhardtii)
