Cryo-EM structure of the dystrophin glycoprotein complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8yt8
Q-score: 0.412
Wan L, Ge X, Xu Q, Huang G, Yang T, Campbell KP, Yan Z, Wu J
Nature (2025) 637 pp. 1252-1260 [ Pubmed: 39663450 DOI: doi:10.1038/s41586-024-08310-2 ]
- Beta-sarcoglycan (28 kDa, Protein from Mus musculus)
- Cholesterol (386 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Unknown segment (559 Da, Protein from Mus musculus)
- Sarcospan (19 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dystrobrevin alpha (23 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- Delta-sarcoglycan (29 kDa, Protein from Mus musculus)
- Gamma-sarcoglycan (28 kDa, Protein from Mus musculus)
- Dystrophin glycoprotein complex, dgc (Complex from Mus musculus)
- Beta-dystroglycan (31 kDa, Protein from Mus musculus)
- Alpha-sarcoglycan (32 kDa, Protein from Mus musculus)
- Dystrophin (38 kDa, Protein from Mus musculus)
- Calcium ion (40 Da, Ligand)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7xni
Q-score: 0.315
Ma D, Zhong L, Yan Z, Yao J, Zhang Y, Ye F, Huang Y, Lai D, Yang W, Hou P, Guo J
PNAS (2022) 119 pp. e2207067119-e2207067119 [ DOI: doi:10.1073/pnas.2207067119 Pubmed: 36763058 ]
- Potassium voltage-gated channel subfamily kqt member 1 (76 kDa, Protein from Homo sapiens)
- Calmodulin-3 (19 kDa, Protein from Homo sapiens)
- Kcnq1-cam complex (Cellular component from Homo sapiens)
human KCNQ1-CaM in complex with ML277
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7xnk
Q-score: 0.467
Ma D, Zhong L, Yan Z, Yao J, Zhang Y, Ye F, Huang Y, Lai D, Yang W, Hou P, Guo J
PNAS (2022) 119 pp. e2207067119-e2207067119 [ DOI: doi:10.1073/pnas.2207067119 Pubmed: 36763058 ]
- Calmodulin-3 (19 kDa, Protein from Homo sapiens)
- (2r)-n-[4-(4-methoxyphenyl)-1,3-thiazol-2-yl]-1-(4-methylbenzene-1-sulfonyl)piperidine-2-carboxamide (471 Da, Ligand)
- Potassium voltage-gated channel subfamily kqt member 1 (76 kDa, Protein from Homo sapiens)
- Kcnq1-cam in complex with ml277 (Cellular component from Homo sapiens)
- Potassium ion (39 Da, Ligand)
human KCNQ1-CaM-ML277-PIP2 complex in state A
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xnl
Q-score: 0.412
Ma D, Zhong L, Yan Z, Yao J, Zhang Y, Ye F, Huang Y, Lai D, Yang W, Hou P, Guo J
PNAS (2022) 119 pp. e2207067119-e2207067119 [ DOI: doi:10.1073/pnas.2207067119 Pubmed: 36763058 ]
- Calmodulin-3 (19 kDa, Protein from Homo sapiens)
- Human kcnq1-cam-ml277-pip2 complex in state a (Cellular component from Homo sapiens)
- (2r)-n-[4-(4-methoxyphenyl)-1,3-thiazol-2-yl]-1-(4-methylbenzene-1-sulfonyl)piperidine-2-carboxamide (471 Da, Ligand)
- Potassium voltage-gated channel subfamily kqt member 1 (76 kDa, Protein from Homo sapiens)
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Potassium ion (39 Da, Ligand)
human KCNQ1-CaM-ML277-PIP2 complex in state B
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7xnn
Q-score: 0.428
Ma D, Zhong L, Yan Z, Yao J, Zhang Y, Ye F, Huang Y, Lai D, Yang W, Hou P, Guo J
PNAS (2022) 119 pp. e2207067119-e2207067119 [ DOI: doi:10.1073/pnas.2207067119 Pubmed: 36763058 ]
- Calmodulin-3 (19 kDa, Protein from Homo sapiens)
- (2r)-n-[4-(4-methoxyphenyl)-1,3-thiazol-2-yl]-1-(4-methylbenzene-1-sulfonyl)piperidine-2-carboxamide (471 Da, Ligand)
- Human kcnq1-cam-ml277-pip2 complex in state b (Cellular component from Homo sapiens)
- Potassium voltage-gated channel subfamily kqt member 1 (76 kDa, Protein from Homo sapiens)
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Potassium ion (39 Da, Ligand)
Cryo-EM structure of Chlamydomonas TOC-TIC supercomplex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7vcf
Q-score: 0.589
Jin Z, Wan L, Zhang Y, Li X, Cao Y, Liu H, Fan S, Cao D, Wang Z, Li X, Pan J, Dong MQ, Wu J, Yan Z
Cell (2022) 185 pp. 4788-4800.e13 [ DOI: doi:10.1016/j.cell.2022.10.030 Pubmed: 36413996 ]
- Tic56 (28 kDa, Protein from Chlamydomonas reinhardtii)
- Toc75 (87 kDa, Protein from Chlamydomonas reinhardtii)
- Toc39 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Tic100 (107 kDa, Protein from Chlamydomonas reinhardtii)
- Tic214 (232 kDa, Protein from Chlamydomonas reinhardtii)
- Ylmg (21 kDa, Protein from Chlamydomonas reinhardtii)
- Toc-tic supercomplex (Complex from Chlamydomonas reinhardtii)
- Tic35 (35 kDa, Protein from Chlamydomonas reinhardtii)
- Inositol hexakisphosphate (660 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Tic20-venus-flag (60 kDa, Protein from Chlamydomonas reinhardtii)
- Tic12 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Toc120 (102 kDa, Protein from Chlamydomonas reinhardtii)
- Toc52 (52 kDa, Protein from Chlamydomonas reinhardtii)
- Toc10 (10 kDa, Protein from Chlamydomonas reinhardtii)
- Tic13 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
- Toc34 (44 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown fragment (2 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Cryo-EM structure of Pseudomonas aeruginosa SutA transcription activation complex
Resolution: 5.8 Å
EM Method: Single-particle
Fitted PDBs: 7f0r
Q-score: 0.16
He D, You L, Wu X, Shi J, Wen A, Yan Z, Mu W, Fang C, Feng Y, Zhang Y
Nat Commun (2022) 13 pp. 4204-4204 [ DOI: doi:10.1038/s41467-022-31871-7 Pubmed: 35859063 ]
- Transcriptional factor suta (11 kDa, Protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
- Dna (Complex)
- Pseudomonas aeruginosa suta transcription activation complex (433 kDa, Complex from Pseudomonas aeruginosa PAO1)
- Dna (70-mer) (21 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
- Dna-directed rna polymerase subunit alpha (38 kDa, Protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta (151 kDa, Protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
- Dna (70-mer) (21 kDa, DNA from synthetic construct)
- Pseudomonas aeruginosa suta transcription activation (Complex)
- Rna polymerase sigma factor rpos (39 kDa, Protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes
Resolution: 4.04 Å
EM Method: Single-particle
Fitted PDBs: 7vf9
Q-score: 0.373
He D, You L, Wu X, Shi J, Wen A, Yan Z, Mu W, Fang C, Feng Y, Zhang Y
Nat Commun (2022) 13 pp. 4204-4204 [ DOI: doi:10.1038/s41467-022-31871-7 Pubmed: 35859063 ]
- Dna-directed rna polymerase subunit alpha (38 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Pseudomonas aeruginosa rnap sigmas holoenzyme complexes (432 kDa, Complex from Pseudomonas aeruginosa PAO1)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (151 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Rna polymerase sigma factor rpos (38 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Pseudomonas aeruginosa PAO1)
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7xl3
Q-score: 0.468
He D, You L, Wu X, Shi J, Wen A, Yan Z, Mu W, Fang C, Feng Y, Zhang Y
Nat Commun (2022) 13 pp. 4204-4204 [ DOI: doi:10.1038/s41467-022-31871-7 Pubmed: 35859063 ]
- Dna-directed rna polymerase subunit alpha (38 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Transcriptional factor suta (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (151 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Pseudomonas aeruginosa rnap sigmas holoenzyme with transcription factor suta complex(open lobe) (433 kDa, Complex from Pseudomonas aeruginosa PAO1)
- Rna polymerase sigma factor rpos (38 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Pseudomonas aeruginosa PAO1)
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 7xl4
Q-score: 0.39
He D, You L, Wu X, Shi J, Wen A, Yan Z, Mu W, Fang C, Feng Y, Zhang Y
Nat Commun (2022) 13 pp. 4204-4204 [ DOI: doi:10.1038/s41467-022-31871-7 Pubmed: 35859063 ]
- Dna-directed rna polymerase subunit alpha (38 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Pseudomonas aeruginosa rnap sigmas holoenzyme with transcription factor suta complex(closed lobe) (433 kDa, Complex from Pseudomonas aeruginosa PAO1)
- Transcriptional factor suta (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (151 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Rna polymerase sigma factor rpos (38 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Pseudomonas aeruginosa PAO1)