Cryo-EM Structure of the Arabidopsis thaliana TIC Complex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8z9y
Q-score: 0.531
Liang K, Jin Z, Zhan X, Li Y, Xu Q, Xie Y, Yang Y, Wang S, Wu J, Yan Z
Cell (2024) 187 pp. 5651-5664.e18 [ DOI: doi:10.1016/j.cell.2024.08.003 Pubmed: 39197452 ]
- Protein tic 56, chloroplastic (61 kDa, Protein from Arabidopsis thaliana)
- Arabidopsis thaliana tic complex (Complex from Arabidopsis thaliana)
- Protein tic 100 (100 kDa, Protein from Arabidopsis thaliana)
- Nucleusenvelope protein (30 kDa, Protein from Arabidopsis thaliana)
- Protein tic 214 (214 kDa, Protein from Arabidopsis thaliana)
- Protein tic 20-i, chloroplastic (31 kDa, Protein from Arabidopsis thaliana)
- Actin t1-like protein (12 kDa, Protein from Arabidopsis thaliana)
The structure of Candida albicans Cdr1 in fluconazole-bound state
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9iul
Q-score: 0.567
Peng Y, Lu Y, Sun H, Ma J, Li X, Han X, Fang Z, Tan J, Qiu Y, Qu T, Yin M, Yan Z
Nat Commun (2024) 15 pp. 7722-7722 [ DOI: doi:10.1038/s41467-024-52107-w Pubmed: 39242571 ]
- 2-(2,4-difluorophenyl)-1,3-di(1h-1,2,4-triazol-1-yl)propan-2-ol (306 Da, Ligand)
- The cryo-em structure of candida albicans cdr1 in fluconazole-bound state (Complex from Candida albicans SC5314)
- Pip2(20:4/18:0) (1 kDa, Ligand)
- Pleiotropic abc efflux transporter of multiple drugs cdr1 (170 kDa, Protein from Candida albicans SC5314)
The structure of Candida albicans Cdr1 in milbemycin oxime-inhibited state
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 9ium
Q-score: 0.547
Peng Y, Lu Y, Sun H, Ma J, Li X, Han X, Fang Z, Tan J, Qiu Y, Qu T, Yin M, Yan Z
Nat Commun (2024) 15 pp. 7722-7722 [ DOI: doi:10.1038/s41467-024-52107-w Pubmed: 39242571 ]
- The cryo-em structure of candida albicans cdr1 in milbemycin oxime-inhibited state (Complex from Candida albicans SC5314)
- Pleiotropic abc efflux transporter of multiple drugs cdr1 (170 kDa, Protein from Candida albicans SC5314)
- Milbemycin oxime (555 Da, Ligand)
- Pip2(20:4/18:0) (1 kDa, Ligand)
The composite EM map of the Ycf2-FtsHi motor complex from Arabidopsis in ATP-bound state
Liang K, Jin Z, Zhan X, Li Y, Xu Q, Xie Y, Yang Y, Wang S, Wu J, Yan Z
Cell (2024) 187 pp. 5651- [ DOI: doi:10.1016/j.cell.2024.08.003 Pubmed: 39197452 ]
- Probable inactive atp-dependent zinc metalloprotease ftshi 2, chloroplastic (100 kDa, Protein from Arabidopsis thaliana)
- Protein ycf2 (269 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic (105 kDa, Protein from Arabidopsis thaliana)
- Unk (3 kDa, Protein from Arabidopsis thaliana)
- Atp-dependent zinc metalloprotease ftsh 12, chloroplastic (115 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Aspartyl/glutamyl-trna (asn/gln) amidotransferase subunit b (9 kDa, Protein from Arabidopsis thaliana)
- Magnesium ion (24 Da, Ligand)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Malate dehydrogenase, chloroplastic (42 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 4, chloroplastic (96 kDa, Protein from Arabidopsis thaliana)
- Attam46 (45 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- 1,2-dilauroyl-sn-glycero-3-phosphate (535 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Probable inactive atp-dependent zinc metalloprotease ftshi 5, chloroplastic (152 kDa, Protein from Arabidopsis thaliana)
- Embryo defective 2737 (37 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- The ycf2-ftshi motor complex from arabidopsis (Complex from Arabidopsis thaliana)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- At4g28210 (38 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of the Ycf2-FtsHi motor complex from Arabidopsis in Apo state
Liang K, Jin Z, Zhan X, Li Y, Xu Q, Xie Y, Yang Y, Wang S, Wu J, Yan Z
Cell (2024) 187 pp. 5651- [ DOI: doi:10.1016/j.cell.2024.08.003 Pubmed: 39197452 ]
- Probable inactive atp-dependent zinc metalloprotease ftshi 2, chloroplastic (100 kDa, Protein from Arabidopsis thaliana)
- Protein ycf2 (269 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic (105 kDa, Protein from Arabidopsis thaliana)
- Unk (3 kDa, Protein from Arabidopsis thaliana)
- Atp-dependent zinc metalloprotease ftsh 12, chloroplastic (115 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Aspartyl/glutamyl-trna (asn/gln) amidotransferase subunit b (9 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Malate dehydrogenase, chloroplastic (42 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 4, chloroplastic (96 kDa, Protein from Arabidopsis thaliana)
- Attam46 (45 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- 1,2-dilauroyl-sn-glycero-3-phosphate (535 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Probable inactive atp-dependent zinc metalloprotease ftshi 5, chloroplastic (152 kDa, Protein from Arabidopsis thaliana)
- Embryo defective 2737 (37 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- The ycf2-ftshi motor complex from arabidopsis (Complex from Arabidopsis thaliana)
- At4g28210 (38 kDa, Protein from Arabidopsis thaliana)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8xqw
Q-score: 0.502
Liang K, Zhan X, Li Y, Yang Y, Xie Y, Jin Z, Xu X, Zhang W, Lu Y, Zhang S, Zou Y, Feng S, Wu J, Yan Z
Cell (2024) 187 pp. 5638-5650.e18 [ DOI: doi:10.1016/j.cell.2024.08.002 Pubmed: 39197449 ]
- Diacyl glycerol (625 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Crtam49 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam34 (34 kDa, Protein from Chlamydomonas reinhardtii)
- Ctap6 (109 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam15 (15 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam35 (34 kDa, Protein from Chlamydomonas reinhardtii)
- The ycf2-ftshi motor complex from chlamydomonas (Complex from Chlamydomonas reinhardtii)
- Unk (7 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl1 (128 kDa, Protein from Chlamydomonas reinhardtii)
- Acp (12 kDa, Protein from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Ctap1 (107 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Ctap7 (71 kDa, Protein from Chlamydomonas reinhardtii)
- Arhl (51 kDa, Protein from Chlamydomonas reinhardtii)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Crtam31 (31 kDa, Protein from Chlamydomonas reinhardtii)
- Unk (13 kDa, Protein from Chlamydomonas reinhardtii)
- Tic22 (40 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-sitosterol (416 Da, Ligand)
- Fadl (70 kDa, Protein from Chlamydomonas reinhardtii)
- Dnaj (50 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl3 (120 kDa, Protein from Chlamydomonas reinhardtii)
- Ycf2 (342 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam29 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam39 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Pcya (61 kDa, Protein from Chlamydomonas reinhardtii)
Cryo-EM structure of the Ycf2-FtsHi motor complex from chlamydomonas reinhardtii in apo state
Liang K, Zhan X, Li Y, Yang Y, Xie Y, Jin Z, Xu X, Zhang W, Lu Y, Zhang S, Zou Y, Feng S, Wu J, Yan Z
Cell (2024) 187 pp. 5638-5650.e18 [ DOI: doi:10.1016/j.cell.2024.08.002 Pubmed: 39197449 ]
- Diacyl glycerol (625 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Crtam49 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam34 (34 kDa, Protein from Chlamydomonas reinhardtii)
- Ctap6 (109 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam15 (15 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam35 (34 kDa, Protein from Chlamydomonas reinhardtii)
- The ycf2-ftshi motor complex from chlamydomonas (Complex from Chlamydomonas reinhardtii)
- Unk (7 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl1 (128 kDa, Protein from Chlamydomonas reinhardtii)
- Acp (12 kDa, Protein from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Ctap1 (107 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Ctap7 (71 kDa, Protein from Chlamydomonas reinhardtii)
- Arhl (51 kDa, Protein from Chlamydomonas reinhardtii)
- Zinc ion (65 Da, Ligand)
- Crtam31 (31 kDa, Protein from Chlamydomonas reinhardtii)
- Unk (13 kDa, Protein from Chlamydomonas reinhardtii)
- Tic22 (40 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-sitosterol (416 Da, Ligand)
- Fadl (70 kDa, Protein from Chlamydomonas reinhardtii)
- Dnaj (50 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl3 (120 kDa, Protein from Chlamydomonas reinhardtii)
- Ycf2 (342 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam29 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam39 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Pcya (61 kDa, Protein from Chlamydomonas reinhardtii)
Cryo-EM structure of Chlamydomonas TOC-TIC supercomplex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7vcf
Q-score: 0.589
Jin Z, Wan L, Zhang Y, Li X, Cao Y, Liu H, Fan S, Cao D, Wang Z, Li X, Pan J, Dong MQ, Wu J, Yan Z
Cell (2022) 185 pp. 4788-4800.e13 [ DOI: doi:10.1016/j.cell.2022.10.030 Pubmed: 36413996 ]
- Tic56 (28 kDa, Protein from Chlamydomonas reinhardtii)
- Toc75 (87 kDa, Protein from Chlamydomonas reinhardtii)
- Toc39 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Tic100 (107 kDa, Protein from Chlamydomonas reinhardtii)
- Tic214 (232 kDa, Protein from Chlamydomonas reinhardtii)
- Ylmg (21 kDa, Protein from Chlamydomonas reinhardtii)
- Toc-tic supercomplex (Complex from Chlamydomonas reinhardtii)
- Tic35 (35 kDa, Protein from Chlamydomonas reinhardtii)
- Inositol hexakisphosphate (660 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Tic20-venus-flag (60 kDa, Protein from Chlamydomonas reinhardtii)
- Tic12 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Toc120 (102 kDa, Protein from Chlamydomonas reinhardtii)
- Toc52 (52 kDa, Protein from Chlamydomonas reinhardtii)
- Toc10 (10 kDa, Protein from Chlamydomonas reinhardtii)
- Tic13 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
- Toc34 (44 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown fragment (2 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
CsgFG complex in Curli biogenesis system
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 6l7a
Q-score: 0.521
Nat Commun (2020) 11 pp. 241-241 [ Pubmed: 31932609 DOI: doi:10.1038/s41467-019-14145-7 ]
- Csgf (15 kDa, Protein from Escherichia coli)
- Curli transport csgfg complex (Complex from Escherichia coli K-12)
- Curli production assembly/transport protein csgg (30 kDa, Protein from Escherichia coli O69:H11 str. 08-4661)