Cryo-EM structure of the dystrophin glycoprotein complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8yt8
Q-score: 0.412
Wan L, Ge X, Xu Q, Huang G, Yang T, Campbell KP, Yan Z, Wu J
Nature (2025) 637 pp. 1252-1260 [ Pubmed: 39663450 DOI: doi:10.1038/s41586-024-08310-2 ]
- Beta-sarcoglycan (28 kDa, Protein from Mus musculus)
- Cholesterol (386 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Unknown segment (559 Da, Protein from Mus musculus)
- Sarcospan (19 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dystrobrevin alpha (23 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- Delta-sarcoglycan (29 kDa, Protein from Mus musculus)
- Gamma-sarcoglycan (28 kDa, Protein from Mus musculus)
- Dystrophin glycoprotein complex, dgc (Complex from Mus musculus)
- Beta-dystroglycan (31 kDa, Protein from Mus musculus)
- Alpha-sarcoglycan (32 kDa, Protein from Mus musculus)
- Dystrophin (38 kDa, Protein from Mus musculus)
- Calcium ion (40 Da, Ligand)
Cryo-EM Structure of the Arabidopsis thaliana TIC Complex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8z9y
Q-score: 0.531
Liang K, Jin Z, Zhan X, Li Y, Xu Q, Xie Y, Yang Y, Wang S, Wu J, Yan Z
Cell (2024) 187 pp. 5651-5664.e18 [ DOI: doi:10.1016/j.cell.2024.08.003 Pubmed: 39197452 ]
- Protein tic 56, chloroplastic (61 kDa, Protein from Arabidopsis thaliana)
- Arabidopsis thaliana tic complex (Complex from Arabidopsis thaliana)
- Protein tic 100 (100 kDa, Protein from Arabidopsis thaliana)
- Nucleusenvelope protein (30 kDa, Protein from Arabidopsis thaliana)
- Protein tic 214 (214 kDa, Protein from Arabidopsis thaliana)
- Protein tic 20-i, chloroplastic (31 kDa, Protein from Arabidopsis thaliana)
- Actin t1-like protein (12 kDa, Protein from Arabidopsis thaliana)
The composite EM map of the Ycf2-FtsHi motor complex from Arabidopsis in ATP-bound state
Liang K, Jin Z, Zhan X, Li Y, Xu Q, Xie Y, Yang Y, Wang S, Wu J, Yan Z
Cell (2024) 187 pp. 5651- [ DOI: doi:10.1016/j.cell.2024.08.003 Pubmed: 39197452 ]
- Probable inactive atp-dependent zinc metalloprotease ftshi 2, chloroplastic (100 kDa, Protein from Arabidopsis thaliana)
- Protein ycf2 (269 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic (105 kDa, Protein from Arabidopsis thaliana)
- Unk (3 kDa, Protein from Arabidopsis thaliana)
- Atp-dependent zinc metalloprotease ftsh 12, chloroplastic (115 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Aspartyl/glutamyl-trna (asn/gln) amidotransferase subunit b (9 kDa, Protein from Arabidopsis thaliana)
- Magnesium ion (24 Da, Ligand)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Malate dehydrogenase, chloroplastic (42 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 4, chloroplastic (96 kDa, Protein from Arabidopsis thaliana)
- Attam46 (45 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- 1,2-dilauroyl-sn-glycero-3-phosphate (535 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Probable inactive atp-dependent zinc metalloprotease ftshi 5, chloroplastic (152 kDa, Protein from Arabidopsis thaliana)
- Embryo defective 2737 (37 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- The ycf2-ftshi motor complex from arabidopsis (Complex from Arabidopsis thaliana)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- At4g28210 (38 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of the Ycf2-FtsHi motor complex from Arabidopsis in Apo state
Liang K, Jin Z, Zhan X, Li Y, Xu Q, Xie Y, Yang Y, Wang S, Wu J, Yan Z
Cell (2024) 187 pp. 5651- [ DOI: doi:10.1016/j.cell.2024.08.003 Pubmed: 39197452 ]
- Probable inactive atp-dependent zinc metalloprotease ftshi 2, chloroplastic (100 kDa, Protein from Arabidopsis thaliana)
- Protein ycf2 (269 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic (105 kDa, Protein from Arabidopsis thaliana)
- Unk (3 kDa, Protein from Arabidopsis thaliana)
- Atp-dependent zinc metalloprotease ftsh 12, chloroplastic (115 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Aspartyl/glutamyl-trna (asn/gln) amidotransferase subunit b (9 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- Malate dehydrogenase, chloroplastic (42 kDa, Protein from Arabidopsis thaliana)
- Probable inactive atp-dependent zinc metalloprotease ftshi 4, chloroplastic (96 kDa, Protein from Arabidopsis thaliana)
- Attam46 (45 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- 1,2-dilauroyl-sn-glycero-3-phosphate (535 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Probable inactive atp-dependent zinc metalloprotease ftshi 5, chloroplastic (152 kDa, Protein from Arabidopsis thaliana)
- Embryo defective 2737 (37 kDa, Protein from Arabidopsis thaliana)
- Unk (1 kDa, Protein from Arabidopsis thaliana)
- The ycf2-ftshi motor complex from arabidopsis (Complex from Arabidopsis thaliana)
- At4g28210 (38 kDa, Protein from Arabidopsis thaliana)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8xqw
Q-score: 0.502
Liang K, Zhan X, Li Y, Yang Y, Xie Y, Jin Z, Xu X, Zhang W, Lu Y, Zhang S, Zou Y, Feng S, Wu J, Yan Z
Cell (2024) 187 pp. 5638-5650.e18 [ DOI: doi:10.1016/j.cell.2024.08.002 Pubmed: 39197449 ]
- Diacyl glycerol (625 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Crtam49 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam34 (34 kDa, Protein from Chlamydomonas reinhardtii)
- Ctap6 (109 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam15 (15 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam35 (34 kDa, Protein from Chlamydomonas reinhardtii)
- The ycf2-ftshi motor complex from chlamydomonas (Complex from Chlamydomonas reinhardtii)
- Unk (7 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl1 (128 kDa, Protein from Chlamydomonas reinhardtii)
- Acp (12 kDa, Protein from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Ctap1 (107 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Ctap7 (71 kDa, Protein from Chlamydomonas reinhardtii)
- Arhl (51 kDa, Protein from Chlamydomonas reinhardtii)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Crtam31 (31 kDa, Protein from Chlamydomonas reinhardtii)
- Unk (13 kDa, Protein from Chlamydomonas reinhardtii)
- Tic22 (40 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-sitosterol (416 Da, Ligand)
- Fadl (70 kDa, Protein from Chlamydomonas reinhardtii)
- Dnaj (50 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl3 (120 kDa, Protein from Chlamydomonas reinhardtii)
- Ycf2 (342 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam29 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam39 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Pcya (61 kDa, Protein from Chlamydomonas reinhardtii)
Cryo-EM structure of the Ycf2-FtsHi motor complex from chlamydomonas reinhardtii in apo state
Liang K, Zhan X, Li Y, Yang Y, Xie Y, Jin Z, Xu X, Zhang W, Lu Y, Zhang S, Zou Y, Feng S, Wu J, Yan Z
Cell (2024) 187 pp. 5638-5650.e18 [ DOI: doi:10.1016/j.cell.2024.08.002 Pubmed: 39197449 ]
- Diacyl glycerol (625 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Crtam49 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam34 (34 kDa, Protein from Chlamydomonas reinhardtii)
- Ctap6 (109 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam15 (15 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam35 (34 kDa, Protein from Chlamydomonas reinhardtii)
- The ycf2-ftshi motor complex from chlamydomonas (Complex from Chlamydomonas reinhardtii)
- Unk (7 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl1 (128 kDa, Protein from Chlamydomonas reinhardtii)
- Acp (12 kDa, Protein from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Ctap1 (107 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Ctap7 (71 kDa, Protein from Chlamydomonas reinhardtii)
- Arhl (51 kDa, Protein from Chlamydomonas reinhardtii)
- Zinc ion (65 Da, Ligand)
- Crtam31 (31 kDa, Protein from Chlamydomonas reinhardtii)
- Unk (13 kDa, Protein from Chlamydomonas reinhardtii)
- Tic22 (40 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-sitosterol (416 Da, Ligand)
- Fadl (70 kDa, Protein from Chlamydomonas reinhardtii)
- Dnaj (50 kDa, Protein from Chlamydomonas reinhardtii)
- Fhl3 (120 kDa, Protein from Chlamydomonas reinhardtii)
- Ycf2 (342 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam29 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Crtam39 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Pcya (61 kDa, Protein from Chlamydomonas reinhardtii)
Cryo-EM structure of human NALCN in complex with FAM155A
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7cm3
Q-score: 0.485
Xie J, Ke M, Xu L, Lin S, Huang J, Zhang J, Yang F, Wu J, Yan Z
Nat Commun (2020) 11 pp. 5831-5831 [ Pubmed: 33203861 DOI: doi:10.1038/s41467-020-19667-z ]
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Binary complex of human nalcn with fam155a (Complex from Homo sapiens)
- Transmembrane protein fam155a (54 kDa, Protein from Homo sapiens)
- Sodium leak channel non-selective protein (203 kDa, Protein from Homo sapiens)
CryoEM structure of type II secretion system secretin GspD in E.coli K12
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 5wq7
Q-score: 0.467
CryoEM structure of type II secretion system secretin GspD in Vibrio cholerae
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 5wq8
Q-score: 0.458
CryoEM structure of type II secretion system secretin GspD G453A mutant in Vibrio cholerae
Resolution: 4.22 Å
EM Method: Single-particle
Fitted PDBs: 5wq9
Q-score: 0.236