Cryo-EM Structure of Bacteriophage FCWL1 head-to-tail interface
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9jlf
Q-score: 0.451
Cai C, Wang Y, Liu Y, Shao Q, Wang A, Li L, Zheng Y, Zhang T, Luo Z, Yang C, Fang Q
To Be Published
- Escherichia phage fcwl1 (Virus from Escherichia phage FCWL1)
- Connector protein (13 kDa, Protein from Escherichia phage FCWL1)
- Portal protein (49 kDa, Protein from Escherichia phage FCWL1)
- Adaptor protein (15 kDa, Protein from Escherichia phage FCWL1)
- Tail tube protein (24 kDa, Protein from Escherichia phage FCWL1)
- Terminator protein (15 kDa, Protein from Escherichia phage FCWL1)
Cryo-EM Structure of Bacteriophage FCWL1 Capsid
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9kmg
Q-score: 0.587
Cai C, Wang Y, Liu Y, Shao Q, Wang A, Li L, Zheng Y, Zhang T, Luo Z, Yang C, Fang Q
To Be Published
- Major capsid protein (35 kDa, Protein from Escherichia phage FCWL1)
- Escherichia phage fcwl1 (Virus from Escherichia phage FCWL1)
- Decoration protein (17 kDa, Protein from Escherichia phage FCWL1)
The Composite Cryo-EM Structure of the Portal Vertex of Bacteriophage FCWL1
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9kmh
Q-score: 0.475
Cai C, Wang Y, Liu Y, Shao Q, Wang A, Li L, Zheng Y, Zhang T, Luo Z, Yang C, Fang Q
To Be Published
- Escherichia phage fcwl1 (Virus from Escherichia phage FCWL1)
- Connector protein (13 kDa, Protein from Escherichia phage FCWL1)
- Portal protein (49 kDa, Protein from Escherichia phage FCWL1)
- Decoration protein gp29 (26 kDa, Protein from Escherichia phage FCWL1)
- Adaptor protein (15 kDa, Protein from Escherichia phage FCWL1)
- Tail tube protein (24 kDa, Protein from Escherichia phage FCWL1)
- Terminator protein (15 kDa, Protein from Escherichia phage FCWL1)
- Decoration protein (17 kDa, Protein from Escherichia phage FCWL1)
- Major capsid protein (35 kDa, Protein from Escherichia phage FCWL1)
Composite map of PIC_delta_TFIIK form2
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8uoq
Q-score: 0.239
Yang C, Basnet P, Sharmin S, Shen H, Kaplan CD, Murakami K
Nucleic Acids Res (2024) 52 pp. 11602-11611 [ DOI: doi:10.1093/nar/gkae805 Pubmed: 39287137 ]
- Transcription initiation factor iie subunit alpha (54 kDa, Protein from Saccharomyces cerevisiae)
- Template strand (19 kDa, DNA from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb2 (138 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iib (38 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iia large subunit (32 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- Tata-box-binding protein (27 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih helicase subunit xpd/rad3 (89 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iif subunit beta (46 kDa, Protein from Saccharomyces cerevisiae)
- Non-template strand (19 kDa, DNA from Saccharomyces cerevisiae)
- Transcription initiation factor iia subunit 2 (13 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit ssl1 (52 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih helicase subunit xpb (95 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iie subunit beta (37 kDa, Protein from Saccharomyces cerevisiae)
- Composite map of pic_deltatfiik form 2 (1 MDa, Complex from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb4 (37 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iif subunit alpha (82 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb1 (191 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Transcription elongation factor s-ii (34 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb1 (72 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb2 (58 kDa, Protein from Saccharomyces cerevisiae)
Composite map of PICdeltaTFIIK form1
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8uot
Q-score: 0.283
Yang C, Basnet P, Sharmin S, Shen H, Kaplan CD, Murakami K
Nucleic Acids Res (2024) 52 pp. 11602-11611 [ Pubmed: 39287137 DOI: doi:10.1093/nar/gkae805 ]
- Tata-box-binding protein (27 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit ssl1 (52 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb1 (72 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Composite map of picdeltatfiik form1 (1 MDa, Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Template dna strand (19 kDa, DNA from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb2 (58 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb4 (37 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iie subunit alpha (54 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iib (38 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iie subunit beta (37 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb5 (8 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih helicase subunit xpd/rad3 (89 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Saccharomyces cerevisiae)
- Non-template dna strand (19 kDa, DNA from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iia large subunit (32 kDa, Protein from Saccharomyces cerevisiae)
- Transcription elongation factor s-ii (34 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih helicase subunit xpb (95 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase ii subunit rpb1 (191 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb2 (138 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iif subunit beta (46 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iif subunit alpha (82 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iia subunit 2 (13 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from Saccharomyces cerevisiae)
Caenorhabditis elegans ACR-23 in betaine and monepantel bound state
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8zfk
Q-score: 0.622
Liu F, Li T, Gong H, Tian F, Bai Y, Wang H, Yang C, Li Y, Guo F, Liu S, Chen Q
EMBO J (2024) 43 pp. 3787-3806 [ DOI: doi:10.1038/s44318-024-00165-7 Pubmed: 39009676 ]
- Water (18 Da, Ligand)
- ~{n}-[(2~{s})-2-cyano-1-[5-cyano-2-(trifluoromethyl)phenoxy]propan-2-yl]-4-(trifluoromethylsulfanyl)benzamide (473 Da, Ligand)
- Betaine receptor acr-23,soluble cytochrome b562 (70 kDa, Protein from Caenorhabditis elegans)
- Acetylcholine receptor like-23(acr-23) (67 kDa, Complex from Caenorhabditis elegans)
- Trimethyl glycine (118 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)