Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at post-state I
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8yhd
Q-score: 0.5
Yang J, Li X, He Q, Wang X, Tang J, Wang T, Zhang Y, Yu F, Zhang S, Liu Z, Zhang L, Liao F, Yin H, Zhao H, Deng Z, Zhang H
Nature (2024) 633 pp. 465-472 [ DOI: doi:10.1038/s41586-024-07815-0 Pubmed: 39143216 ]
- Rna (53-mer) (21 kDa, RNA from metagenome)
- Rna (35-mer) (16 kDa, RNA from metagenome)
- A protein (27 kDa, Protein from metagenome)
- A protein (22 kDa, Protein from metagenome)
- A protein (70 kDa, Protein from metagenome)
- A protein (Complex from metagenome)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at post-state II
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8yhe
Q-score: 0.506
Yang J, Li X, He Q, Wang X, Tang J, Wang T, Zhang Y, Yu F, Zhang S, Liu Z, Zhang L, Liao F, Yin H, Zhao H, Deng Z, Zhang H
Nature (2024) 633 pp. 465-472 [ DOI: doi:10.1038/s41586-024-07815-0 Pubmed: 39143216 ]
- Rna (46-mer) (15 kDa, RNA from metagenome)
- Protein structure (Complex from metagenome)
- Protein structure (70 kDa, Protein from metagenome)
- Protein structure (22 kDa, Protein from metagenome)
- Rna (29-mer) (16 kDa, RNA from metagenome)
- Protein structure (27 kDa, Protein from metagenome)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at substrate-engaged state II
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8z4j
Q-score: 0.507
Yang J, Li X, He Q, Wang X, Tang J, Wang T, Zhang Y, Yu F, Zhang S, Liu Z, Zhang L, Liao F, Yin H, Zhao H, Deng Z, Zhang H
Nature (2024) 633 pp. 465-472 [ DOI: doi:10.1038/s41586-024-07815-0 Pubmed: 39143216 ]
- Protein structure (70 kDa, Protein from metagenome)
- Protein structure (22 kDa, Protein from metagenome)
- Rna (38-mer) (19 kDa, RNA from metagenome)
- Rna (34-mer) (19 kDa, RNA from metagenome)
- Protein structure (27 kDa, Protein from metagenome)
- A protein (Complex from metagenome)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at substrate-engaged state I
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 8z4l
Q-score: 0.531
Yang J, Li X, He Q, Wang X, Tang J, Wang T, Zhang Y, Yu F, Zhang S, Liu Z, Zhang L, Liao F, Yin H, Zhao H, Deng Z, Zhang H
Nature (2024) 633 pp. 465-472 [ DOI: doi:10.1038/s41586-024-07815-0 Pubmed: 39143216 ]
- A protein (Complex from metagenome)
- Rna (40-mer) (19 kDa, RNA from metagenome)
- A protein (27 kDa, Protein from metagenome)
- A protein (70 kDa, Protein from metagenome)
- A protein (22 kDa, Protein from metagenome)
- Rna (49-mer) (19 kDa, RNA from metagenome)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of NTR-bound type VII CRISPR-Cas complex at substrate-engaged state +I
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8z99
Q-score: 0.487
Yang J, Li X, He Q, Wang X, Tang J, Wang T, Zhang Y, Yu F, Zhang S, Liu Z, Zhang L, Liao F, Yin H, Zhao H, Deng Z, Zhang H
Nature (2024) 633 pp. 465-472 [ DOI: doi:10.1038/s41586-024-07815-0 Pubmed: 39143216 ]
- Rna (49-mer) (19 kDa, RNA from metagenome)
- Rna (54-mer) (19 kDa, RNA from metagenome)
- A protein (27 kDa, Protein from metagenome)
- A protein (70 kDa, Protein from metagenome)
- A protein (22 kDa, Protein from metagenome)
- A protein (Complex from metagenome)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of NTR-bound type VII CRISPR-Cas complex at substrate-engaged state I
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8z9c
Q-score: 0.528
Yang J, Li X, He Q, Wang X, Tang J, Wang T, Zhang Y, Yu F, Zhang S, Liu Z, Zhang L, Liao F, Yin H, Zhao H, Deng Z, Zhang H
Nature (2024) 633 pp. 465-472 [ DOI: doi:10.1038/s41586-024-07815-0 Pubmed: 39143216 ]
- Protein structure (70 kDa, Protein from metagenome)
- Protein structure (22 kDa, Protein from metagenome)
- Protein structure (Complex from metagenome)
- Protein structure (27 kDa, Protein from metagenome)
- Zinc ion (65 Da, Ligand)
- Rna (48-mer) (19 kDa, RNA from metagenome)
- Rna (41-mer) (17 kDa, RNA from metagenome)
Cryo-EM structure of NTR-bound type VII CRISPR-Cas complex at substrate-engaged state II
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 8z9e
Q-score: 0.496
Yang J, Li X, He Q, Wang X, Tang J, Wang T, Zhang Y, Yu F, Zhang S, Liu Z, Zhang L, Liao F, Yin H, Zhao H, Deng Z, Zhang H
Nature (2024) 633 pp. 465-472 [ DOI: doi:10.1038/s41586-024-07815-0 Pubmed: 39143216 ]
- Protein structure (70 kDa, Protein from metagenome)
- Protein structure (22 kDa, Protein from metagenome)
- Rna (34-mer) (19 kDa, RNA from metagenome)
- Protein structure (Complex from metagenome)
- Protein structure (27 kDa, Protein from metagenome)
- Zinc ion (65 Da, Ligand)
- Rna (39-mer) (19 kDa, RNA from metagenome)
FSHR-Follicle stimulating hormone-compound 716340-Gs complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8i2g
Q-score: 0.363
Duan J, Xu P, Zhang H, Luan X, Yang J, He X, Mao C, Shen DD, Ji Y, Cheng X, Jiang H, Jiang Y, Zhang S, Zhang Y, Xu HE
Nat Commun (2023) 14 pp. 519-519 [ DOI: doi:10.1038/s41467-023-36170-3 Pubmed: 36720854 ]
- Chimera of guanine nucleotide-binding protein g(s) subunit alpha and guanine nucleotide-binding protein g(s) subunit alpha isoforms xlas (30 kDa, Protein from Homo sapiens)
- Glycoprotein hormones alpha chain (10 kDa, Protein from Homo sapiens)
- Nb35 (13 kDa, Protein from Lama glama)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Follitropin subunit beta (12 kDa, Protein from Homo sapiens)
- Myristic acid (228 Da, Ligand)
- N-tert-butyl-n-ethyl-8-methoxy-9-propan-2-yloxy-1-thiophen-2-yl-5,6-dihydroimidazo[5,1-a]isoquinoline-3-carboxamide (467 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Fshr-follicle stimulating hormone-compound 716340-gs complex (Complex from Homo sapiens)
- Follicle-stimulating hormone receptor (76 kDa, Protein from Homo sapiens)
Follicle stimulating hormone receptor
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 8i2h
Q-score: 0.022
Cryo-EM structure of human apo unphosphorylated APC/C
Zhang S, Chang L, Alfieri C, Zhang Z, Yang J, Maslen S, Skehel M, Barford D
Nature (2016) 533 pp. 260-264 [ DOI: doi:10.1038/nature17973 Pubmed: 27120157 ]
- Anaphase-promoting complex subunit 11 (9 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 6 (71 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 4 (92 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 7 (66 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 8 (68 kDa, Protein from Homo sapiens)
- Recombinant human apo unphosphorylated apc/c (1 MDa, Sample)
- Anaphase-promoting complex subunit 12 (9 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 15 (14 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 16 (11 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 5 (85 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 10 (21 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 2 (93 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 13 (8 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 3 (91 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 1 (216 kDa, Protein from Homo sapiens)