Su J, Tian X, Wang Z, Yang J, Sun S, Sui SF
Pnas Nexus (2024) 3 pp. pgae269-pgae269 [ DOI: doi:10.1093/pnasnexus/pgae269 Pubmed: 39071881 ]
- Tom complex with whole tom20 (168 MDa, Complex from Homo sapiens)
SARS-CoV-2 RBD in complex with 1F Fab
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7y7k
Q-score: 0.241
Zhao S, Liu F, Qiu S, Lan Q, Wu Y, Xu W, Ke J, Yang J, Liu X, Wang K, Guo H, Xia S, Zhang F, Wang J, Hu X, Lu L, Jiang S, Zhao S, Liu L, Xie Y, Yang X, Wang H, Zhong G
Protein Cell (2023) 14 pp. 74-78 [ DOI: doi:10.1093/procel/pwac042 Pubmed: 36726762 ]
- 1f fab (Complex from Homo sapiens)
- 1f vl (11 kDa, Protein from Homo sapiens)
- 1f vh (14 kDa, Protein from Homo sapiens)
- Sars-cov-2 rbd complex with 1f fab (Complex)
- Spike protein s1 (20 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
Human L-TGF-beta1 in complex with the anchor protein LRRC33
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 7y1r
Q-score: 0.187
Duan Z, Lin X, Wang L, Zhen Q, Jiang Y, Chen C, Yang J, Lee CH, Qin Y, Li Y, Zhao B, Wang J, Zhang Z
Nat Commun (2022) 13 pp. 4988-4988 [ Pubmed: 36008481 DOI: doi:10.1038/s41467-022-32655-9 ]
- L-tgf-beta1 in complex with its anchor protein lrrc33 (150 kDa, Complex from Homo sapiens)
- Transforming growth factor beta activator lrrc33 (72 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transforming growth factor beta-1 proprotein (43 kDa, Protein from Homo sapiens)
Structure of the human CCAN CENP-A alpha-satellite complex
Resolution: 4.55 Å
EM Method: Single-particle
Fitted PDBs: 7r5v
Q-score: 0.238
Yatskevich S, Muir KW, Bellini D, Zhang Z, Yang J, Tischer T, Predin M, Dendooven T, McLaughlin SH, Barford D
Science (2022) 376 pp. 844-852 [ Pubmed: 35420891 DOI: doi:10.1126/science.abn3810 ]
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Centromere protein l (39 kDa, Protein from Homo sapiens)
- Dna (171-mer) (52 kDa, DNA from Homo sapiens)
- Centromere protein h (28 kDa, Protein from Homo sapiens)
- Centromere protein n (39 kDa, Protein from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Ccan-cenp-a inner centromere complex (Complex)
- Dna (171-mer) (52 kDa, DNA from Homo sapiens)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Centromere protein q (30 kDa, Protein from Homo sapiens)
- Centromere protein u (47 kDa, Protein from Homo sapiens)
CryoEM structure of the ternary DOCK2-ELMO1-RAC1 complex
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6tgc
Q-score: 0.129
Chang L, Yang J, Jo CH, Boland A, Zhang Z, McLaughlin SH, Abu-Thuraia A, Killoran RC, Smith MJ, Cote JF, Barford D
Nat Commun (2020) 11 pp. 3464-3464 [ DOI: doi:10.1038/s41467-020-17271-9 Pubmed: 32651375 ]
- Ras-related c3 botulinum toxin substrate 1 (21 kDa, Protein from Homo sapiens)
- Engulfment and cell motility protein 1 (83 kDa, Protein from Homo sapiens)
- Ternary complex of dock2-elmo1-rac1 (600 kDa, Complex from Homo sapiens)
- Dedicator of cytokinesis protein 2 (195 kDa, Protein from Homo sapiens)
Human apo-TRPML3 channel at pH 7.4
Resolution: 4.06 Å
EM Method: Single-particle
Fitted PDBs: 6aye
Q-score: 0.401
Zhou X, Li M, Su D, Jia Q, Li H, Li X, Yang J
Nat Struct Mol Biol (2017) 24 pp. 1146-1154 [ Pubmed: 29106414 DOI: doi:10.1038/nsmb.3502 ]
- Human trpml3 apo channel at ph 7.4 (Complex from Homo sapiens)
- Mucolipin-3 (64 kDa, Protein from Homo sapiens)
Human Apo-TRPML3 channel at pH 4.8
Resolution: 4.65 Å
EM Method: Single-particle
Fitted PDBs: 6ayg
Q-score: 0.336
Zhou X, Li M, Su D, Jia Q, Li H, Li X, Yang J
Nat Struct Mol Biol (2017) 24 pp. 1146-1154 [ Pubmed: 29106414 DOI: doi:10.1038/nsmb.3502 ]
- Mucolipin-3 (64 kDa, Protein from Homo sapiens)
- Human trpml3 channel at ph 4.8 (Complex from Homo sapiens)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 5lcw
Q-score: 0.252
Alfieri C, Chang L, Zhang Z, Yang J, Maslen S, Skehel M, Barford D
Nature (2016) 536 pp. 431-436 [ Pubmed: 27509861 DOI: doi:10.1038/nature19083 ]
- Anaphase-promoting complex subunit 7 (66 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 16 (11 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex/cyclosome, in complex with the mitotic checkpoint complex in closed conformation (apc/c-mcc-closed) at 4.2 angstrom resolution (1 MDa, Complex from Homo sapiens)
- Anaphase-promoting complex subunit 4 (92 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 2 (93 kDa, Protein from Homo sapiens)
- Mitotic checkpoint serine/threonine-protein kinase bub1 beta,mitotic checkpoint serine/threonine-protein kinase bub1 beta (39 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 10 (21 kDa, Protein from Homo sapiens)
- Cell division cycle protein 23 homolog (68 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 11 (9 kDa, Protein from Homo sapiens)
- Mitotic spindle assembly checkpoint protein mad2a (23 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 5 (85 kDa, Protein from Homo sapiens)
- Cell division cycle protein 27 homolog (91 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 15 (14 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 1 (216 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 13 (8 kDa, Protein from Homo sapiens)
- Cell division cycle protein 20 homolog (41 kDa, Protein from Homo sapiens)
- Cell division cycle protein 20 homolog (54 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit cdc26 (9 kDa, Protein from Homo sapiens)
- Cell division cycle protein 16 homolog (71 kDa, Protein from Homo sapiens)
Cryo-EM structure of a human APC/C mutant with Apc1 300s loop deleted in complex with TAME
Zhang S, Chang L, Alfieri C, Zhang Z, Yang J, Maslen S, Skehel M, Barford D
Nature (2016) 533 pp. 260-264 [ DOI: doi:10.1038/nature17973 Pubmed: 27120157 ]
- Anaphase-promoting complex subunit 3 (91 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 15 (14 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 16 (11 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 1 (216 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 5 (85 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 8 (68 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 12 (9 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 13 (8 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 2 (93 kDa, Protein from Homo sapiens)
- Tosyl-l-arginine methyl ester (Ligand from unidentified)
- Anaphase-promoting complex subunit 6 (71 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 10 (21 kDa, Protein from Homo sapiens)
- Recombinant human apc/c mutant with apc1 300s loop deleted in complex with tame (1 MDa, Sample)
- Anaphase-promoting complex subunit 4 (92 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 7 (66 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 11 (9 kDa, Protein from Homo sapiens)
Cryo-EM structure of human apo phosphorylated APC/C
Zhang S, Chang L, Alfieri C, Zhang Z, Yang J, Maslen S, Skehel M, Barford D
Nature (2016) 533 pp. 260-264 [ DOI: doi:10.1038/nature17973 Pubmed: 27120157 ]
- Anaphase-promoting complex subunit 3 (91 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 15 (14 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 16 (11 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 1 (216 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 5 (85 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 8 (68 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 12 (9 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 13 (8 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 2 (93 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 6 (71 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 10 (21 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 4 (92 kDa, Protein from Homo sapiens)
- Recombinant human apo apc/c phosphorylated in vitro (1 MDa, Sample)
- Anaphase-promoting complex subunit 7 (66 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 11 (9 kDa, Protein from Homo sapiens)