Muir KW, Batters C, Dendooven T, Yang J, Zhang Z, Burt A, Barford D
Science (2023) 382 pp. 1184-1190 [ Pubmed: 38060647 DOI: doi:10.1126/science.adj8736 ]
S. cerevisiae apo unphosphorylated APC/C
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8a5y
Q-score: 0.192
Barford D, Fernandez-Vazquez E, Zhang Z, Yang J
To Be Published
- Anaphase promoting complex/cyclosome (apc/c) (1 MDa, Complex from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc27 (85 kDa, Protein from Saccharomyces cerevisiae)
- Unphosphorylated apo apc/c complex (Complex from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc26 (14 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 5 (79 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit doc1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit mnd2 (42 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc23 (73 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 4 (75 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 9 (30 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 11 (18 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 1 (196 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Anaphase-promoting complex subunit swm1 (19 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 2 (100 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc16 (96 kDa, Protein from Saccharomyces cerevisiae)
CryoEM structure of the ternary DOCK2-ELMO1-RAC1 complex
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6tgc
Q-score: 0.129
Chang L, Yang J, Jo CH, Boland A, Zhang Z, McLaughlin SH, Abu-Thuraia A, Killoran RC, Smith MJ, Cote JF, Barford D
Nat Commun (2020) 11 pp. 3464-3464 [ DOI: doi:10.1038/s41467-020-17271-9 Pubmed: 32651375 ]
- Ras-related c3 botulinum toxin substrate 1 (21 kDa, Protein from Homo sapiens)
- Engulfment and cell motility protein 1 (83 kDa, Protein from Homo sapiens)
- Ternary complex of dock2-elmo1-rac1 (600 kDa, Complex from Homo sapiens)
- Dedicator of cytokinesis protein 2 (195 kDa, Protein from Homo sapiens)
Human apo-TRPML3 channel at pH 7.4
Resolution: 4.06 Å
EM Method: Single-particle
Fitted PDBs: 6aye
Q-score: 0.401
Zhou X, Li M, Su D, Jia Q, Li H, Li X, Yang J
Nat Struct Mol Biol (2017) 24 pp. 1146-1154 [ Pubmed: 29106414 DOI: doi:10.1038/nsmb.3502 ]
- Human trpml3 apo channel at ph 7.4 (Complex from Homo sapiens)
- Mucolipin-3 (64 kDa, Protein from Homo sapiens)
Human Apo-TRPML3 channel at pH 4.8
Resolution: 4.65 Å
EM Method: Single-particle
Fitted PDBs: 6ayg
Q-score: 0.336
Zhou X, Li M, Su D, Jia Q, Li H, Li X, Yang J
Nat Struct Mol Biol (2017) 24 pp. 1146-1154 [ Pubmed: 29106414 DOI: doi:10.1038/nsmb.3502 ]
- Mucolipin-3 (64 kDa, Protein from Homo sapiens)
- Human trpml3 channel at ph 4.8 (Complex from Homo sapiens)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 5lcw
Q-score: 0.252
Alfieri C, Chang L, Zhang Z, Yang J, Maslen S, Skehel M, Barford D
Nature (2016) 536 pp. 431-436 [ Pubmed: 27509861 DOI: doi:10.1038/nature19083 ]
- Anaphase-promoting complex subunit 7 (66 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 16 (11 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex/cyclosome, in complex with the mitotic checkpoint complex in closed conformation (apc/c-mcc-closed) at 4.2 angstrom resolution (1 MDa, Complex from Homo sapiens)
- Anaphase-promoting complex subunit 4 (92 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 2 (93 kDa, Protein from Homo sapiens)
- Mitotic checkpoint serine/threonine-protein kinase bub1 beta,mitotic checkpoint serine/threonine-protein kinase bub1 beta (39 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 10 (21 kDa, Protein from Homo sapiens)
- Cell division cycle protein 23 homolog (68 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 11 (9 kDa, Protein from Homo sapiens)
- Mitotic spindle assembly checkpoint protein mad2a (23 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 5 (85 kDa, Protein from Homo sapiens)
- Cell division cycle protein 27 homolog (91 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 15 (14 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 1 (216 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 13 (8 kDa, Protein from Homo sapiens)
- Cell division cycle protein 20 homolog (41 kDa, Protein from Homo sapiens)
- Cell division cycle protein 20 homolog (54 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit cdc26 (9 kDa, Protein from Homo sapiens)
- Cell division cycle protein 16 homolog (71 kDa, Protein from Homo sapiens)
Cryo-EM structure of a human APC/C mutant with Apc1 300s loop deleted in complex with TAME
Zhang S, Chang L, Alfieri C, Zhang Z, Yang J, Maslen S, Skehel M, Barford D
Nature (2016) 533 pp. 260-264 [ DOI: doi:10.1038/nature17973 Pubmed: 27120157 ]
- Anaphase-promoting complex subunit 3 (91 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 15 (14 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 16 (11 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 1 (216 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 5 (85 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 8 (68 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 12 (9 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 13 (8 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 2 (93 kDa, Protein from Homo sapiens)
- Tosyl-l-arginine methyl ester (Ligand from unidentified)
- Anaphase-promoting complex subunit 6 (71 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 10 (21 kDa, Protein from Homo sapiens)
- Recombinant human apc/c mutant with apc1 300s loop deleted in complex with tame (1 MDa, Sample)
- Anaphase-promoting complex subunit 4 (92 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 7 (66 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 11 (9 kDa, Protein from Homo sapiens)
Cryo-EM structure of human apo phosphorylated APC/C
Zhang S, Chang L, Alfieri C, Zhang Z, Yang J, Maslen S, Skehel M, Barford D
Nature (2016) 533 pp. 260-264 [ DOI: doi:10.1038/nature17973 Pubmed: 27120157 ]
- Anaphase-promoting complex subunit 3 (91 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 15 (14 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 16 (11 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 1 (216 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 5 (85 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 8 (68 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 12 (9 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 13 (8 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 2 (93 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 6 (71 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 10 (21 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 4 (92 kDa, Protein from Homo sapiens)
- Recombinant human apo apc/c phosphorylated in vitro (1 MDa, Sample)
- Anaphase-promoting complex subunit 7 (66 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 11 (9 kDa, Protein from Homo sapiens)