SARS-CoV-2 RBD in complex with 1F Fab
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7y7k
Q-score: 0.241
Zhao S, Liu F, Qiu S, Lan Q, Wu Y, Xu W, Ke J, Yang J, Liu X, Wang K, Guo H, Xia S, Zhang F, Wang J, Hu X, Lu L, Jiang S, Zhao S, Liu L, Xie Y, Yang X, Wang H, Zhong G
Protein Cell (2023) 14 pp. 74-78 [ Pubmed: 36726762 DOI: doi:10.1093/procel/pwac042 ]
- Sars-cov-2 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 rbd complex with 1f fab (Complex)
- 1f fab (Complex from Homo sapiens)
- 1f vh (14 kDa, Protein from Homo sapiens)
- Spike protein s1 (20 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 1f vl (11 kDa, Protein from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8e4c
Q-score: 0.232
Dong Y, Pi X, Bartels-Burgahn F, Saltukoglu D, Liang Z, Yang J, Alt FW, Reth M, Wu H
Nature (2022) 612 pp. 156-161 [ DOI: doi:10.1038/s41586-022-05412-7 Pubmed: 36228656 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bcr complex (Complex from Mus musculus)
- B-cell antigen receptor complex-associated protein alpha chain,yellow fluorescent protein (42 kDa, Protein from Mus musculus)
- Isoform 2 of immunoglobulin heavy constant mu (45 kDa, Protein from Mus musculus)
- B-cell antigen receptor complex-associated protein beta chain (25 kDa, Protein from Mus musculus)
S. cerevisiae apo unphosphorylated APC/C
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8a5y
Q-score: 0.192
Barford D, Fernandez-Vazquez E, Zhang Z, Yang J
To Be Published
- Unphosphorylated apo apc/c complex (Complex from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 1 (196 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Anaphase-promoting complex subunit 5 (79 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit swm1 (19 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit mnd2 (42 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 2 (100 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit doc1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc16 (96 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 11 (18 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc23 (73 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 4 (75 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 9 (30 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc27 (85 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase promoting complex/cyclosome (apc/c) (1 MDa, Complex from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc26 (14 kDa, Protein from Saccharomyces cerevisiae)
Human L-TGF-beta1 in complex with the anchor protein LRRC33
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 7y1r
Q-score: 0.187
Duan Z, Lin X, Wang L, Zhen Q, Jiang Y, Chen C, Yang J, Lee CH, Qin Y, Li Y, Zhao B, Wang J, Zhang Z
Nat Commun (2022) 13 pp. 4988-4988 [ Pubmed: 36008481 DOI: doi:10.1038/s41467-022-32655-9 ]
- Transforming growth factor beta activator lrrc33 (72 kDa, Protein from Homo sapiens)
- L-tgf-beta1 in complex with its anchor protein lrrc33 (150 kDa, Complex from Homo sapiens)
- Transforming growth factor beta-1 proprotein (43 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of the human CCAN CENP-A alpha-satellite complex
Resolution: 4.55 Å
EM Method: Single-particle
Fitted PDBs: 7r5v
Q-score: 0.238
Yatskevich S, Muir KW, Bellini D, Zhang Z, Yang J, Tischer T, Predin M, Dendooven T, McLaughlin SH, Barford D
Science (2022) 376 pp. 844-852 [ Pubmed: 35420891 DOI: doi:10.1126/science.abn3810 ]
- Centromere protein l (39 kDa, Protein from Homo sapiens)
- Centromere protein n (39 kDa, Protein from Homo sapiens)
- Centromere protein u (47 kDa, Protein from Homo sapiens)
- Centromere protein q (30 kDa, Protein from Homo sapiens)
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Dna (171-mer) (52 kDa, DNA from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Dna (171-mer) (52 kDa, DNA from Homo sapiens)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
- Ccan-cenp-a inner centromere complex (Complex)
- Centromere protein h (28 kDa, Protein from Homo sapiens)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
CryoEM structure of the ternary DOCK2-ELMO1-RAC1 complex
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6tgc
Q-score: 0.129
Chang L, Yang J, Jo CH, Boland A, Zhang Z, McLaughlin SH, Abu-Thuraia A, Killoran RC, Smith MJ, Cote JF, Barford D
Nat Commun (2020) 11 pp. 3464-3464 [ DOI: doi:10.1038/s41467-020-17271-9 Pubmed: 32651375 ]
- Engulfment and cell motility protein 1 (83 kDa, Protein from Homo sapiens)
- Dedicator of cytokinesis protein 2 (195 kDa, Protein from Homo sapiens)
- Ras-related c3 botulinum toxin substrate 1 (21 kDa, Protein from Homo sapiens)
- Ternary complex of dock2-elmo1-rac1 (600 kDa, Complex from Homo sapiens)
Structure of inner kinetochore CCAN-Cenp-A complex
Resolution: 4.15 Å
EM Method: Single-particle
Fitted PDBs: 6qld
Q-score: 0.328
Yan K, Yang J, Zhang Z, McLaughlin SH, Chang L, Fasci D, Ehrenhofer-Murray AE, Heck AJR, Barford D
Nature (2019) 574 pp. 278-282 [ Pubmed: 31578520 DOI: doi:10.1038/s41586-019-1609-1 ]
- Histone h2b.1 (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Inner kinetochore subunit mcm16 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Kinetochore (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) cerevisiae)
- Histones (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Inner kinetochore subunit nkp1 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2a.1 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2a.1 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Inner kinetochore subunit mcm21 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h4 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Inner kinetochore subunit ame1 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b.2 (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Inner kinetochore subunit chl4 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (125-mer) (38 kDa, DNA from Escherichia coli)
- Inner kinetochore subunit mif2 (2 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h3-like centromeric protein cse4 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Inner kinetochore ccan complex assembled onto a centromeric nucleosome (Complex)
- Inner kinetochore subunit okp1 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h3-like centromeric protein cse4 (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Inner kinetochore subunit ctf3 (47 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (125-mer) (38 kDa, DNA from Escherichia coli)
- Inner kinetochore subunit nkp2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Inner kinetochore subunit iml3 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (Complex from Escherichia coli)
- Inner kinetochore subunit ctf19 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Inner kinetochore subunit mcm22 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of the CBF3-CEN3 complex of the budding yeast kinetochore
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6gys
Q-score: 0.245
Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D
Nat Struct Mol Biol (2018) 25 pp. 1103-1110 [ Pubmed: 30478265 DOI: doi:10.1038/s41594-018-0154-1 ]
- Dna (52-mer) (16 kDa, DNA from Saccharomyces cerevisiae)
- Cryo-em structure of the cbf3-cen3 complex of the budding yeast kinetochore (Complex from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit b (71 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit a (112 kDa, Protein from Saccharomyces cerevisiae)
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit c (56 kDa, Protein from Saccharomyces cerevisiae)
- Dna (52-mer) (15 kDa, DNA from Saccharomyces cerevisiae)
Human apo-TRPML3 channel at pH 7.4
Resolution: 4.06 Å
EM Method: Single-particle
Fitted PDBs: 6aye
Q-score: 0.401
Zhou X, Li M, Su D, Jia Q, Li H, Li X, Yang J
Nat Struct Mol Biol (2017) 24 pp. 1146-1154 [ DOI: doi:10.1038/nsmb.3502 Pubmed: 29106414 ]
- Mucolipin-3 (64 kDa, Protein from Homo sapiens)
- Human trpml3 apo channel at ph 7.4 (Complex from Homo sapiens)