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primary_citation_author:"Yang J" AND xref_links:"pdb" AND citation_journal_name:"TO BE PUBLISHED"
S. cerevisiae APC/C-Cdh1 complex
Release date: Aug. 31, 2022
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8a3t
Q-score: 0.336
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8a3t
Q-score: 0.336
Barford D, Vazquez-Fernandez E, Zhang Z, Yang J
To Be Published
Sample:
- Anaphase-promoting complex subunit cdc27 (85 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc26 (14 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 5 (79 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit doc1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit mnd2 (42 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc23 (73 kDa, Protein from Saccharomyces cerevisiae)
- Cdh1 isoform 1 (62 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 4 (75 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 9 (30 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase promoting complex/cyclosome (apc/c) in complex with cdh1 and hsl1 (1 MDa, Complex from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 11 (18 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 1 (196 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Anaphase-promoting complex subunit swm1 (19 kDa, Protein from Saccharomyces cerevisiae)
- Hsl1 isoform 1 (169 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 2 (100 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc16 (96 kDa, Protein from Saccharomyces cerevisiae)
S. cerevisiae apo unphosphorylated APC/C
Release date: Aug. 31, 2022
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8a5y
Q-score: 0.192
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8a5y
Q-score: 0.192
Barford D, Fernandez-Vazquez E, Zhang Z, Yang J
To Be Published
Sample:
- Anaphase promoting complex/cyclosome (apc/c) (1 MDa, Complex from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc27 (85 kDa, Protein from Saccharomyces cerevisiae)
- Unphosphorylated apo apc/c complex (Complex from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc26 (14 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 5 (79 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit doc1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit mnd2 (42 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc23 (73 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 4 (75 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 9 (30 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 11 (18 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 1 (196 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Anaphase-promoting complex subunit swm1 (19 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 2 (100 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc16 (96 kDa, Protein from Saccharomyces cerevisiae)
S. cerevisiae apo phosphorylated APC/C
Release date: Aug. 31, 2022
Resolution: 5.4 Å
EM Method: Single-particle
Fitted PDBs: 8a61
Q-score: 0.223
Resolution: 5.4 Å
EM Method: Single-particle
Fitted PDBs: 8a61
Q-score: 0.223
Barford D, Fernandez-Vazquez E, Zhang Z, Yang J
To Be Published
Sample:
- Anaphase-promoting complex subunit cdc27 (85 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc26 (14 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 5 (79 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit doc1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit mnd2 (42 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc23 (73 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 4 (75 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 9 (30 kDa, Protein from Saccharomyces cerevisiae)
- Phosphorylated apo anaphase promoting complex/cyclosome (apc/c) (1 MDa, Complex from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 11 (18 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 1 (196 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit swm1 (19 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit 2 (100 kDa, Protein from Saccharomyces cerevisiae)
- Anaphase-promoting complex subunit cdc16 (96 kDa, Protein from Saccharomyces cerevisiae)
SARS-CoV-2 spike protein in one-RBD weak state after CTSL-treatment
SARS-CoV-2 spike protein in two-RBD weak state after CTSL-treatment
Cenp-A nucleosome in complex with Cenp-C
Release date: July 7, 2021
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7on1
Q-score: 0.47
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7on1
Q-score: 0.47
Yan K, Yang J, Zhang Z, Barford D
To Be Published
Sample:
- Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae)
- Dna (123-mer) (38 kDa, DNA from Escherichia coli)
- Histones (Complex from Saccharomyces cerevisiae)
- Cenp-a nucleosome in complex with cenp-c (Complex)
- Dna (152-mer) (45 kDa, DNA from Escherichia coli)
- Dna (152-mer), dna (123-mer) (Complex from Escherichia coli)
- Histone h2b (14 kDa, Protein from Saccharomyces cerevisiae)
- Bj4_g0007000.mrna.1.cds.1 (27 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2a (14 kDa, Protein from Saccharomyces cerevisiae)
- Bj4_g0006610.mrna.1.cds.1 (62 kDa, Protein from Saccharomyces cerevisiae)
- Kinetochore subunit (Complex from Saccharomyces cerevisiae)