Negative stain EM assembly of MYC, JAZ, and NINJA complex
Resolution: 10.4 Å
EM Method: Single-particle
Fitted PDBs: 8t2i
Q-score: 0.038
Zhou XE, Zhang Y, Yao J, Zheng J, Zhou Y, He Q, Moreno J, Lam VQ, Cao X, Sugimoto K, Vanegas-Cano L, Kariapper L, Suino-Powell K, Zhu Y, Novick S, Griffin PR, Zhang F, Howe GA, Melcher K
Plant Commun. (2023) 4 pp. 100639-100639 [ Pubmed: 37322867 DOI: doi:10.1016/j.xplc.2023.100639 ]
- Transcription factor myc3 (20 kDa, Protein from Arabidopsis thaliana)
- Maltose/maltodextrin-binding periplasmic protein (44 kDa, Protein from Escherichia coli)
- Mbp fused myc jaz ninja complex (Complex from Arabidopsis thaliana)
- Protein tify 10a (27 kDa, Protein from Arabidopsis thaliana)
- Afp homolog 2 (44 kDa, Protein from Arabidopsis thaliana)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7xni
Q-score: 0.315
Ma D, Zhong L, Yan Z, Yao J, Zhang Y, Ye F, Huang Y, Lai D, Yang W, Hou P, Guo J
PNAS (2022) 119 pp. e2207067119-e2207067119 [ DOI: doi:10.1073/pnas.2207067119 Pubmed: 36763058 ]
- Potassium voltage-gated channel subfamily kqt member 1 (76 kDa, Protein from Homo sapiens)
- Kcnq1-cam complex (Cellular component from Homo sapiens)
- Calmodulin-3 (19 kDa, Protein from Homo sapiens)
human KCNQ1-CaM in complex with ML277
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7xnk
Q-score: 0.467
Ma D, Zhong L, Yan Z, Yao J, Zhang Y, Ye F, Huang Y, Lai D, Yang W, Hou P, Guo J
PNAS (2022) 119 pp. e2207067119-e2207067119 [ DOI: doi:10.1073/pnas.2207067119 Pubmed: 36763058 ]
- Potassium voltage-gated channel subfamily kqt member 1 (76 kDa, Protein from Homo sapiens)
- Calmodulin-3 (19 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Kcnq1-cam in complex with ml277 (Cellular component from Homo sapiens)
- (2r)-n-[4-(4-methoxyphenyl)-1,3-thiazol-2-yl]-1-(4-methylbenzene-1-sulfonyl)piperidine-2-carboxamide (471 Da, Ligand)
human KCNQ1-CaM-ML277-PIP2 complex in state A
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xnl
Q-score: 0.412
Ma D, Zhong L, Yan Z, Yao J, Zhang Y, Ye F, Huang Y, Lai D, Yang W, Hou P, Guo J
PNAS (2022) 119 pp. e2207067119-e2207067119 [ DOI: doi:10.1073/pnas.2207067119 Pubmed: 36763058 ]
- Potassium voltage-gated channel subfamily kqt member 1 (76 kDa, Protein from Homo sapiens)
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Human kcnq1-cam-ml277-pip2 complex in state a (Cellular component from Homo sapiens)
- Calmodulin-3 (19 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- (2r)-n-[4-(4-methoxyphenyl)-1,3-thiazol-2-yl]-1-(4-methylbenzene-1-sulfonyl)piperidine-2-carboxamide (471 Da, Ligand)
human KCNQ1-CaM-ML277-PIP2 complex in state B
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7xnn
Q-score: 0.428
Ma D, Zhong L, Yan Z, Yao J, Zhang Y, Ye F, Huang Y, Lai D, Yang W, Hou P, Guo J
PNAS (2022) 119 pp. e2207067119-e2207067119 [ DOI: doi:10.1073/pnas.2207067119 Pubmed: 36763058 ]
- Potassium voltage-gated channel subfamily kqt member 1 (76 kDa, Protein from Homo sapiens)
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Calmodulin-3 (19 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- (2r)-n-[4-(4-methoxyphenyl)-1,3-thiazol-2-yl]-1-(4-methylbenzene-1-sulfonyl)piperidine-2-carboxamide (471 Da, Ligand)
- Human kcnq1-cam-ml277-pip2 complex in state b (Cellular component from Homo sapiens)
SARS-CoV-2 spike in complex with the Ab4 neutralizing antibody (State 3)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7e39
Q-score: 0.476
Nie J, Xie J, Liu S, Wu J, Liu C, Li J, Liu Y, Wang M, Zhao H, Zhang Y, Yao J, Chen L, Shen Y, Yang Y, Wang HW, Wang Y, Huang W
Cell Discov (2021) 7 pp. 53-53 [ DOI: doi:10.1038/s41421-021-00292-z Pubmed: 34285195 ]
- Heavy chain of ab4 (49 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of ab4 (23 kDa, Protein from Homo sapiens)
- Spike protein s1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of ab4 (Complex from Homo sapiens)
- Complex of spike protein trimer with three ab4 antibodies (Complex)
- Light chain of ab4 (Complex from Homo sapiens)
SARS-Cov-2 spike in complex with the Ab5 neutralizing antibody (focused refinement on Fab-RBD)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7e3b
Q-score: 0.462
Nie J, Xie J, Liu S, Wu J, Liu C, Li J, Liu Y, Wang M, Zhao H, Zhang Y, Yao J, Chen L, Shen Y, Yang Y, Wang HW, Wang Y, Huang W
Cell Discov (2021) 7 pp. 53-53 [ DOI: doi:10.1038/s41421-021-00292-z Pubmed: 34285195 ]
- Light chain of ab5 (23 kDa, Protein from Homo sapiens)
- Heavy chain of ab5 (Complex from Homo sapiens)
- Light chain of ab5 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Complex of spike protein trimer with three ab5 fabs (Complex)
- Heavy chain of ab5 (49 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in complex with the Ab1 neutralizing antibody (focused refinement on Fab-RBD)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7e3c
Q-score: 0.453
Nie J, Xie J, Liu S, Wu J, Liu C, Li J, Liu Y, Wang M, Zhao H, Zhang Y, Yao J, Chen L, Shen Y, Yang Y, Wang HW, Wang Y, Huang W
Cell Discov (2021) 7 pp. 53-53 [ DOI: doi:10.1038/s41421-021-00292-z Pubmed: 34285195 ]
- Heavy chain of ab1 (48 kDa, Protein from Homo sapiens)
- Heavy chain of ab1 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of ab1 (23 kDa, Protein from Homo sapiens)
- Spike protein s1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Complex of spike protein trimer with three ab1 antibodies (Complex)
- Light chain of ab1 (Complex from Homo sapiens)