Negative stain EM assembly of MYC, JAZ, and NINJA complex
Resolution: 10.4 Å
EM Method: Single-particle
Fitted PDBs: 8t2i
Q-score: 0.038
Zhou XE, Zhang Y, Yao J, Zheng J, Zhou Y, He Q, Moreno J, Lam VQ, Cao X, Sugimoto K, Vanegas-Cano L, Kariapper L, Suino-Powell K, Zhu Y, Novick S, Griffin PR, Zhang F, Howe GA, Melcher K
Plant Commun. (2023) 4 pp. 100639-100639 [ Pubmed: 37322867 DOI: doi:10.1016/j.xplc.2023.100639 ]
- Afp homolog 2 (44 kDa, Protein from Arabidopsis thaliana)
- Maltose/maltodextrin-binding periplasmic protein (44 kDa, Protein from Escherichia coli)
- Transcription factor myc3 (20 kDa, Protein from Arabidopsis thaliana)
- Protein tify 10a (27 kDa, Protein from Arabidopsis thaliana)
- Mbp fused myc jaz ninja complex (Complex from Arabidopsis thaliana)
SARS-CoV-2 spike in complex with the Ab4 neutralizing antibody (State 3)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7e39
Q-score: 0.476
Nie J, Xie J, Liu S, Wu J, Liu C, Li J, Liu Y, Wang M, Zhao H, Zhang Y, Yao J, Chen L, Shen Y, Yang Y, Wang HW, Wang Y, Huang W
Cell Discov (2021) 7 pp. 53-53 [ Pubmed: 34285195 DOI: doi:10.1038/s41421-021-00292-z ]
- Heavy chain of ab4 (49 kDa, Protein from Homo sapiens)
- Complex of spike protein trimer with three ab4 antibodies (Complex)
- Heavy chain of ab4 (Complex from Homo sapiens)
- Spike protein s1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of ab4 (23 kDa, Protein from Homo sapiens)
- Light chain of ab4 (Complex from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-Cov-2 spike in complex with the Ab5 neutralizing antibody (focused refinement on Fab-RBD)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7e3b
Q-score: 0.462
Nie J, Xie J, Liu S, Wu J, Liu C, Li J, Liu Y, Wang M, Zhao H, Zhang Y, Yao J, Chen L, Shen Y, Yang Y, Wang HW, Wang Y, Huang W
Cell Discov (2021) 7 pp. 53-53 [ Pubmed: 34285195 DOI: doi:10.1038/s41421-021-00292-z ]
- Heavy chain of ab5 (Complex from Homo sapiens)
- Spike protein s1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of ab5 (49 kDa, Protein from Homo sapiens)
- Complex of spike protein trimer with three ab5 fabs (Complex)
- Light chain of ab5 (23 kDa, Protein from Homo sapiens)
- Light chain of ab5 (Complex from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 spike in complex with the Ab1 neutralizing antibody (focused refinement on Fab-RBD)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7e3c
Q-score: 0.453
Nie J, Xie J, Liu S, Wu J, Liu C, Li J, Liu Y, Wang M, Zhao H, Zhang Y, Yao J, Chen L, Shen Y, Yang Y, Wang HW, Wang Y, Huang W
Cell Discov (2021) 7 pp. 53-53 [ Pubmed: 34285195 DOI: doi:10.1038/s41421-021-00292-z ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complex of spike protein trimer with three ab1 antibodies (Complex)
- Heavy chain of ab1 (48 kDa, Protein from Homo sapiens)
- Spike protein s1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of ab1 (Complex from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of ab1 (Complex from Homo sapiens)
- Light chain of ab1 (23 kDa, Protein from Homo sapiens)
alpha-SNAP-SNARE subcomplex in the whole 20S complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ip1
Q-score: 0.287
Huang X, Sun S, Wang X, Fan F, Zhou Q, Lu S, Cao Y, Wang QW, Dong MQ, Yao J, Sui SF
Sci Adv (2019) 5 pp. eaau8164-eaau8164 [ DOI: doi:10.1126/sciadv.aau8164 Pubmed: 30989110 ]
- Vesicle-associated membrane protein 2 (10 kDa, Protein from Rattus norvegicus)
- Alpha-snap-snare subcomplex in the whole 20s complex (Complex from Rattus norvegicus)
- Syntaxin-1a (29 kDa, Protein from Rattus norvegicus)
- Alpha-soluble nsf attachment protein (34 kDa, Protein from Bos taurus)
- Synaptosomal-associated protein 25 (9 kDa, Protein from Rattus norvegicus)
- Synaptosomal-associated protein 25 (11 kDa, Protein from Rattus norvegicus)
NSF-D1D2 part in the whole 20S complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6ip2
Q-score: 0.384
Huang X, Sun S, Wang X, Fan F, Zhou Q, Lu S, Cao Y, Wang QW, Dong MQ, Yao J, Sui SF
Sci Adv (2019) 5 pp. eaau8164-eaau8164 [ DOI: doi:10.1126/sciadv.aau8164 Pubmed: 30989110 ]
- Nsf-d1d2 part in the whole 20s complex (Complex from Cricetulus griseus)
- Vesicle-fusing atpase (85 kDa, Protein from Cricetulus griseus)
- Adenosine-5'-triphosphate (507 Da, Ligand)